Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02344 and H281DRAFT_02345 are separated by 153 nucleotides H281DRAFT_02345 and H281DRAFT_02346 are separated by 22 nucleotides H281DRAFT_02346 and H281DRAFT_02347 overlap by 4 nucleotides
H281DRAFT_02344: H281DRAFT_02344 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 502,290 to 503,891
_02344
H281DRAFT_02345: H281DRAFT_02345 - type II secretion system protein N (GspN), at 504,045 to 504,824
_02345
H281DRAFT_02346: H281DRAFT_02346 - general secretion pathway protein M, at 504,847 to 505,350
_02346
H281DRAFT_02347: H281DRAFT_02347 - general secretion pathway protein L, at 505,347 to 506,747
_02347
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1 at 503.889 kb on + strand at 503.889 kb on + strand at 503.890 kb on - strand at 503.890 kb on - strand at 503.890 kb on - strand at 503.890 kb on - strand at 503.930 kb on + strand at 503.951 kb on + strand at 503.952 kb on - strand at 503.977 kb on + strand at 504.008 kb on + strand at 504.008 kb on + strand at 504.008 kb on + strand at 504.009 kb on - strand at 504.009 kb on - strand at 504.009 kb on - strand at 504.269 kb on - strand, within H281DRAFT_02345 at 504.269 kb on - strand, within H281DRAFT_02345 at 504.429 kb on + strand, within H281DRAFT_02345 at 504.429 kb on + strand, within H281DRAFT_02345 at 504.450 kb on + strand, within H281DRAFT_02345 at 504.451 kb on - strand, within H281DRAFT_02345 at 504.451 kb on - strand, within H281DRAFT_02345 at 504.498 kb on - strand, within H281DRAFT_02345 at 504.817 kb on + strand at 504.818 kb on - strand at 504.818 kb on - strand at 504.818 kb on - strand at 504.905 kb on - strand, within H281DRAFT_02346 at 504.905 kb on - strand, within H281DRAFT_02346 at 505.310 kb on + strand at 505.464 kb on - strand at 505.464 kb on - strand at 505.486 kb on + strand at 505.486 kb on + strand at 505.487 kb on - strand, within H281DRAFT_02347 at 505.982 kb on + strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand at 505.984 kb on + strand, within H281DRAFT_02347 at 505.984 kb on + strand, within H281DRAFT_02347 at 505.984 kb on + strand, within H281DRAFT_02347 at 505.984 kb on + strand, within H281DRAFT_02347 at 505.984 kb on + strand, within H281DRAFT_02347 at 505.984 kb on + strand, within H281DRAFT_02347 at 505.985 kb on - strand, within H281DRAFT_02347
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 503,889 + -0.1 503,889 + +0.7 503,890 - +1.2 503,890 - +0.0 503,890 - +0.3 503,890 - -2.0 503,930 + -0.5 503,951 + -0.1 503,952 - +0.1 503,977 + +0.1 504,008 + -0.4 504,008 + -0.3 504,008 + +0.0 504,009 - -0.1 504,009 - -0.6 504,009 - -0.8 504,269 - H281DRAFT_02345 0.29 +1.0 504,269 - H281DRAFT_02345 0.29 -0.3 504,429 + H281DRAFT_02345 0.49 +0.7 504,429 + H281DRAFT_02345 0.49 +0.4 504,450 + H281DRAFT_02345 0.52 +1.3 504,451 - H281DRAFT_02345 0.52 +0.1 504,451 - H281DRAFT_02345 0.52 +0.1 504,498 - H281DRAFT_02345 0.58 +0.5 504,817 + +0.1 504,818 - +0.0 504,818 - +0.5 504,818 - +0.2 504,905 - H281DRAFT_02346 0.12 +1.3 504,905 - H281DRAFT_02346 0.12 +1.4 505,310 + -0.5 505,464 - +0.0 505,464 - +0.5 505,486 + -0.2 505,486 + +0.5 505,487 - H281DRAFT_02347 0.10 +0.7 505,982 + H281DRAFT_02347 0.45 +0.3 505,983 - H281DRAFT_02347 0.45 -0.4 505,983 - H281DRAFT_02347 0.45 +0.3 505,983 - H281DRAFT_02347 0.45 +0.4 505,983 - H281DRAFT_02347 0.45 -0.2 505,983 - H281DRAFT_02347 0.45 +1.0 505,983 - H281DRAFT_02347 0.45 +0.5 505,983 - H281DRAFT_02347 0.45 +0.2 505,983 - H281DRAFT_02347 0.45 -0.0 505,983 - +0.6 505,984 + H281DRAFT_02347 0.45 +1.0 505,984 + H281DRAFT_02347 0.45 -0.2 505,984 + H281DRAFT_02347 0.45 -1.0 505,984 + H281DRAFT_02347 0.45 -0.1 505,984 + H281DRAFT_02347 0.45 +0.8 505,984 + H281DRAFT_02347 0.45 +0.6 505,985 - H281DRAFT_02347 0.46 +0.2
Or see this region's nucleotide sequence