Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02125

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02124 and H281DRAFT_02125 are separated by 213 nucleotidesH281DRAFT_02125 and H281DRAFT_02126 are separated by 67 nucleotides H281DRAFT_02124: H281DRAFT_02124 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 255,773 to 257,041 _02124 H281DRAFT_02125: H281DRAFT_02125 - sodium/proton antiporter, CPA1 family, at 257,255 to 259,147 _02125 H281DRAFT_02126: H281DRAFT_02126 - uracil-xanthine permease, at 259,215 to 260,522 _02126 Position (kb) 257 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 256.658 kb on - strand, within H281DRAFT_02124at 256.664 kb on + strand, within H281DRAFT_02124at 256.680 kb on + strand, within H281DRAFT_02124at 256.681 kb on - strand, within H281DRAFT_02124at 256.681 kb on - strand, within H281DRAFT_02124at 256.791 kb on - strand, within H281DRAFT_02124at 257.134 kb on + strandat 257.135 kb on - strandat 257.165 kb on + strandat 257.165 kb on + strandat 257.166 kb on - strandat 257.166 kb on - strandat 257.166 kb on - strandat 257.173 kb on + strandat 257.298 kb on + strandat 257.348 kb on - strandat 257.493 kb on + strand, within H281DRAFT_02125at 258.188 kb on + strand, within H281DRAFT_02125at 258.258 kb on - strand, within H281DRAFT_02125at 258.258 kb on - strand, within H281DRAFT_02125at 258.310 kb on + strand, within H281DRAFT_02125at 258.311 kb on - strand, within H281DRAFT_02125at 258.446 kb on + strand, within H281DRAFT_02125at 258.474 kb on - strand, within H281DRAFT_02125at 258.748 kb on - strand, within H281DRAFT_02125at 258.837 kb on + strand, within H281DRAFT_02125at 258.890 kb on + strand, within H281DRAFT_02125at 258.890 kb on + strand, within H281DRAFT_02125at 258.890 kb on + strand, within H281DRAFT_02125at 258.927 kb on - strand, within H281DRAFT_02125at 258.927 kb on - strand, within H281DRAFT_02125at 259.192 kb on + strandat 259.193 kb on - strandat 259.565 kb on - strand, within H281DRAFT_02126at 259.565 kb on - strand, within H281DRAFT_02126at 259.565 kb on - strand, within H281DRAFT_02126at 259.603 kb on + strand, within H281DRAFT_02126at 259.603 kb on + strand, within H281DRAFT_02126at 259.679 kb on + strandat 259.681 kb on + strand, within H281DRAFT_02126at 259.714 kb on - strand, within H281DRAFT_02126at 259.903 kb on + strandat 259.903 kb on + strand, within H281DRAFT_02126at 259.904 kb on - strand, within H281DRAFT_02126at 259.904 kb on - strand, within H281DRAFT_02126at 260.043 kb on - strand, within H281DRAFT_02126

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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256,658 - H281DRAFT_02124 0.70 -0.1
256,664 + H281DRAFT_02124 0.70 +0.8
256,680 + H281DRAFT_02124 0.71 +0.3
256,681 - H281DRAFT_02124 0.72 -2.8
256,681 - H281DRAFT_02124 0.72 +0.2
256,791 - H281DRAFT_02124 0.80 -0.5
257,134 + +0.8
257,135 - -0.8
257,165 + +0.7
257,165 + -0.9
257,166 - +0.6
257,166 - -1.0
257,166 - +0.7
257,173 + +1.0
257,298 + -0.7
257,348 - +0.6
257,493 + H281DRAFT_02125 0.13 +0.1
258,188 + H281DRAFT_02125 0.49 -0.1
258,258 - H281DRAFT_02125 0.53 +1.1
258,258 - H281DRAFT_02125 0.53 -1.2
258,310 + H281DRAFT_02125 0.56 -0.0
258,311 - H281DRAFT_02125 0.56 -2.0
258,446 + H281DRAFT_02125 0.63 -0.9
258,474 - H281DRAFT_02125 0.64 +0.6
258,748 - H281DRAFT_02125 0.79 -0.0
258,837 + H281DRAFT_02125 0.84 -0.2
258,890 + H281DRAFT_02125 0.86 -2.0
258,890 + H281DRAFT_02125 0.86 -0.9
258,890 + H281DRAFT_02125 0.86 -0.3
258,927 - H281DRAFT_02125 0.88 +0.8
258,927 - H281DRAFT_02125 0.88 +0.3
259,192 + +1.2
259,193 - +0.5
259,565 - H281DRAFT_02126 0.27 -0.6
259,565 - H281DRAFT_02126 0.27 +0.0
259,565 - H281DRAFT_02126 0.27 +1.6
259,603 + H281DRAFT_02126 0.30 +1.5
259,603 + H281DRAFT_02126 0.30 -0.3
259,679 + +2.0
259,681 + H281DRAFT_02126 0.36 -0.9
259,714 - H281DRAFT_02126 0.38 -0.4
259,903 + +0.7
259,903 + H281DRAFT_02126 0.53 +0.6
259,904 - H281DRAFT_02126 0.53 +2.2
259,904 - H281DRAFT_02126 0.53 +1.0
260,043 - H281DRAFT_02126 0.63 +0.0

Or see this region's nucleotide sequence