Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02055 and H281DRAFT_02056 are separated by 8 nucleotides H281DRAFT_02056 and H281DRAFT_02057 are separated by 180 nucleotides H281DRAFT_02057 and H281DRAFT_02058 are separated by 31 nucleotides H281DRAFT_02058 and H281DRAFT_02059 are separated by 30 nucleotides
H281DRAFT_02055: H281DRAFT_02055 - hypothetical protein, at 178,450 to 179,094
_02055
H281DRAFT_02056: H281DRAFT_02056 - (2Fe-2S) ferredoxin, at 179,103 to 179,426
_02056
H281DRAFT_02057: H281DRAFT_02057 - VanZ like family protein, at 179,607 to 180,770
_02057
H281DRAFT_02058: H281DRAFT_02058 - cholesterol transport system auxiliary component, at 180,802 to 181,443
_02058
H281DRAFT_02059: H281DRAFT_02059 - phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein, at 181,474 to 182,436
_02059
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.883 kb on + strand, within H281DRAFT_02055 at 178.883 kb on + strand, within H281DRAFT_02055 at 178.884 kb on - strand, within H281DRAFT_02055 at 178.884 kb on - strand, within H281DRAFT_02055 at 178.884 kb on - strand, within H281DRAFT_02055 at 178.892 kb on + strand, within H281DRAFT_02055 at 179.072 kb on + strand at 179.072 kb on - strand at 179.082 kb on + strand at 179.082 kb on + strand at 179.082 kb on + strand at 179.083 kb on - strand at 179.083 kb on - strand at 179.104 kb on + strand at 179.188 kb on + strand, within H281DRAFT_02056 at 179.188 kb on + strand, within H281DRAFT_02056 at 179.188 kb on + strand, within H281DRAFT_02056 at 179.188 kb on + strand, within H281DRAFT_02056 at 179.189 kb on - strand, within H281DRAFT_02056 at 179.189 kb on - strand, within H281DRAFT_02056 at 179.189 kb on - strand, within H281DRAFT_02056 at 179.189 kb on - strand, within H281DRAFT_02056 at 179.189 kb on - strand, within H281DRAFT_02056 at 179.195 kb on - strand, within H281DRAFT_02056 at 179.320 kb on + strand, within H281DRAFT_02056 at 179.387 kb on + strand at 179.407 kb on + strand at 179.407 kb on + strand at 179.408 kb on - strand at 179.408 kb on - strand at 179.408 kb on - strand at 179.408 kb on - strand at 179.413 kb on + strand at 179.432 kb on - strand at 179.432 kb on - strand at 179.460 kb on + strand at 179.461 kb on - strand at 179.566 kb on + strand at 179.566 kb on + strand at 179.566 kb on + strand at 179.608 kb on + strand at 179.608 kb on + strand at 179.609 kb on - strand at 179.609 kb on - strand at 179.957 kb on + strand, within H281DRAFT_02057 at 179.958 kb on - strand, within H281DRAFT_02057 at 179.991 kb on - strand, within H281DRAFT_02057 at 179.991 kb on - strand, within H281DRAFT_02057 at 179.994 kb on + strand, within H281DRAFT_02057 at 179.994 kb on + strand, within H281DRAFT_02057 at 179.994 kb on + strand, within H281DRAFT_02057 at 179.994 kb on + strand, within H281DRAFT_02057 at 179.995 kb on - strand, within H281DRAFT_02057 at 179.995 kb on - strand, within H281DRAFT_02057 at 180.221 kb on + strand, within H281DRAFT_02057 at 180.250 kb on + strand, within H281DRAFT_02057 at 180.250 kb on + strand, within H281DRAFT_02057 at 180.250 kb on + strand, within H281DRAFT_02057 at 180.251 kb on - strand, within H281DRAFT_02057 at 180.251 kb on - strand, within H281DRAFT_02057 at 180.251 kb on - strand, within H281DRAFT_02057 at 180.324 kb on + strand, within H281DRAFT_02057 at 180.325 kb on - strand, within H281DRAFT_02057 at 180.325 kb on - strand, within H281DRAFT_02057 at 180.448 kb on + strand, within H281DRAFT_02057 at 180.449 kb on - strand, within H281DRAFT_02057 at 180.449 kb on - strand, within H281DRAFT_02057 at 180.553 kb on - strand, within H281DRAFT_02057 at 180.572 kb on - strand, within H281DRAFT_02057 at 180.572 kb on - strand, within H281DRAFT_02057 at 180.691 kb on + strand at 180.692 kb on - strand at 180.692 kb on - strand at 180.710 kb on - strand at 180.710 kb on - strand at 181.311 kb on - strand, within H281DRAFT_02058 at 181.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 178,883 + H281DRAFT_02055 0.67 -0.0 178,883 + H281DRAFT_02055 0.67 +0.6 178,884 - H281DRAFT_02055 0.67 -0.4 178,884 - H281DRAFT_02055 0.67 -0.7 178,884 - H281DRAFT_02055 0.67 +0.1 178,892 + H281DRAFT_02055 0.69 -0.2 179,072 + +0.0 179,072 - -0.4 179,082 + -0.9 179,082 + -0.5 179,082 + -0.2 179,083 - -0.4 179,083 - +1.0 179,104 + +0.3 179,188 + H281DRAFT_02056 0.26 -0.9 179,188 + H281DRAFT_02056 0.26 -1.7 179,188 + H281DRAFT_02056 0.26 -1.5 179,188 + H281DRAFT_02056 0.26 +0.1 179,189 - H281DRAFT_02056 0.27 -1.3 179,189 - H281DRAFT_02056 0.27 +0.1 179,189 - H281DRAFT_02056 0.27 -1.0 179,189 - H281DRAFT_02056 0.27 -0.5 179,189 - H281DRAFT_02056 0.27 -0.4 179,195 - H281DRAFT_02056 0.28 -2.4 179,320 + H281DRAFT_02056 0.67 -1.1 179,387 + +1.1 179,407 + +0.3 179,407 + -1.4 179,408 - +0.3 179,408 - -0.7 179,408 - -0.2 179,408 - -0.1 179,413 + -1.3 179,432 - -0.1 179,432 - -1.1 179,460 + +0.3 179,461 - +1.9 179,566 + +0.3 179,566 + +0.0 179,566 + +0.6 179,608 + -1.6 179,608 + -0.2 179,609 - -0.4 179,609 - -0.4 179,957 + H281DRAFT_02057 0.30 -2.1 179,958 - H281DRAFT_02057 0.30 +1.0 179,991 - H281DRAFT_02057 0.33 -0.0 179,991 - H281DRAFT_02057 0.33 -0.7 179,994 + H281DRAFT_02057 0.33 +1.2 179,994 + H281DRAFT_02057 0.33 -0.6 179,994 + H281DRAFT_02057 0.33 -0.6 179,994 + H281DRAFT_02057 0.33 -0.1 179,995 - H281DRAFT_02057 0.33 +0.1 179,995 - H281DRAFT_02057 0.33 +1.3 180,221 + H281DRAFT_02057 0.53 -1.4 180,250 + H281DRAFT_02057 0.55 +0.2 180,250 + H281DRAFT_02057 0.55 +0.7 180,250 + H281DRAFT_02057 0.55 +0.5 180,251 - H281DRAFT_02057 0.55 -0.2 180,251 - H281DRAFT_02057 0.55 -0.0 180,251 - H281DRAFT_02057 0.55 +0.2 180,324 + H281DRAFT_02057 0.62 -0.5 180,325 - H281DRAFT_02057 0.62 -0.4 180,325 - H281DRAFT_02057 0.62 +0.0 180,448 + H281DRAFT_02057 0.72 +0.2 180,449 - H281DRAFT_02057 0.72 +0.9 180,449 - H281DRAFT_02057 0.72 +0.1 180,553 - H281DRAFT_02057 0.81 -1.0 180,572 - H281DRAFT_02057 0.83 -2.8 180,572 - H281DRAFT_02057 0.83 +0.5 180,691 + +1.7 180,692 - -0.6 180,692 - -0.5 180,710 - +0.0 180,710 - +0.9 181,311 - H281DRAFT_02058 0.79 +0.7 181,504 - -0.1
Or see this region's nucleotide sequence