Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01617

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01616 and H281DRAFT_01617 are separated by 434 nucleotidesH281DRAFT_01617 and H281DRAFT_01618 are separated by 1 nucleotides H281DRAFT_01616: H281DRAFT_01616 - hypothetical protein, at 497,783 to 498,343 _01616 H281DRAFT_01617: H281DRAFT_01617 - hypothetical protein, at 498,778 to 498,990 _01617 H281DRAFT_01618: H281DRAFT_01618 - Outer membrane protein (porin), at 498,992 to 500,143 _01618 Position (kb) 498 499Strain fitness (log2 ratio) -1 0 1at 497.910 kb on + strand, within H281DRAFT_01616at 497.984 kb on + strand, within H281DRAFT_01616at 497.985 kb on - strand, within H281DRAFT_01616at 497.985 kb on - strand, within H281DRAFT_01616at 497.985 kb on - strand, within H281DRAFT_01616at 498.380 kb on + strandat 498.380 kb on + strandat 498.557 kb on - strandat 498.649 kb on + strandat 498.650 kb on - strandat 498.711 kb on - strandat 498.751 kb on + strandat 498.811 kb on + strand, within H281DRAFT_01617at 498.893 kb on + strand, within H281DRAFT_01617at 499.070 kb on + strandat 499.070 kb on + strandat 499.071 kb on - strandat 499.138 kb on + strand, within H281DRAFT_01618at 499.160 kb on + strand, within H281DRAFT_01618at 499.310 kb on + strand, within H281DRAFT_01618at 499.356 kb on - strand, within H281DRAFT_01618at 499.481 kb on + strand, within H281DRAFT_01618at 499.481 kb on + strand, within H281DRAFT_01618at 499.508 kb on + strand, within H281DRAFT_01618at 499.509 kb on - strand, within H281DRAFT_01618at 499.571 kb on + strand, within H281DRAFT_01618at 499.571 kb on + strand, within H281DRAFT_01618at 499.604 kb on + strand, within H281DRAFT_01618at 499.605 kb on - strand, within H281DRAFT_01618at 499.700 kb on + strand, within H281DRAFT_01618at 499.701 kb on - strand, within H281DRAFT_01618at 499.701 kb on - strand, within H281DRAFT_01618at 499.701 kb on - strandat 499.701 kb on - strand, within H281DRAFT_01618at 499.718 kb on + strand, within H281DRAFT_01618at 499.718 kb on + strand, within H281DRAFT_01618at 499.759 kb on + strand, within H281DRAFT_01618at 499.759 kb on + strand, within H281DRAFT_01618at 499.844 kb on + strand, within H281DRAFT_01618at 499.844 kb on + strand, within H281DRAFT_01618at 499.845 kb on - strand, within H281DRAFT_01618at 499.899 kb on - strand, within H281DRAFT_01618at 499.957 kb on + strand, within H281DRAFT_01618at 499.957 kb on + strand, within H281DRAFT_01618at 499.958 kb on - strand, within H281DRAFT_01618at 499.980 kb on - strand, within H281DRAFT_01618

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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497,910 + H281DRAFT_01616 0.23 -0.0
497,984 + H281DRAFT_01616 0.36 +1.0
497,985 - H281DRAFT_01616 0.36 +0.5
497,985 - H281DRAFT_01616 0.36 +0.8
497,985 - H281DRAFT_01616 0.36 +0.5
498,380 + +0.1
498,380 + -0.4
498,557 - -1.2
498,649 + -1.2
498,650 - -0.6
498,711 - -0.2
498,751 + -0.4
498,811 + H281DRAFT_01617 0.15 +0.1
498,893 + H281DRAFT_01617 0.54 +0.4
499,070 + +0.7
499,070 + +0.3
499,071 - -0.5
499,138 + H281DRAFT_01618 0.13 +0.5
499,160 + H281DRAFT_01618 0.15 +0.5
499,310 + H281DRAFT_01618 0.28 +0.0
499,356 - H281DRAFT_01618 0.32 +0.3
499,481 + H281DRAFT_01618 0.42 +0.1
499,481 + H281DRAFT_01618 0.42 -0.7
499,508 + H281DRAFT_01618 0.45 +1.1
499,509 - H281DRAFT_01618 0.45 +0.9
499,571 + H281DRAFT_01618 0.50 +0.9
499,571 + H281DRAFT_01618 0.50 -0.2
499,604 + H281DRAFT_01618 0.53 +0.2
499,605 - H281DRAFT_01618 0.53 +0.2
499,700 + H281DRAFT_01618 0.61 +0.7
499,701 - H281DRAFT_01618 0.62 +0.3
499,701 - H281DRAFT_01618 0.62 +1.0
499,701 - -1.4
499,701 - H281DRAFT_01618 0.62 +0.4
499,718 + H281DRAFT_01618 0.63 -0.8
499,718 + H281DRAFT_01618 0.63 +0.1
499,759 + H281DRAFT_01618 0.67 +1.1
499,759 + H281DRAFT_01618 0.67 -0.5
499,844 + H281DRAFT_01618 0.74 +0.3
499,844 + H281DRAFT_01618 0.74 +0.7
499,845 - H281DRAFT_01618 0.74 +0.3
499,899 - H281DRAFT_01618 0.79 -0.8
499,957 + H281DRAFT_01618 0.84 -0.0
499,957 + H281DRAFT_01618 0.84 -0.0
499,958 - H281DRAFT_01618 0.84 +0.4
499,980 - H281DRAFT_01618 0.86 +0.3

Or see this region's nucleotide sequence