Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01131

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01130 and H281DRAFT_01131 are separated by 174 nucleotidesH281DRAFT_01131 and H281DRAFT_01132 are separated by 530 nucleotides H281DRAFT_01130: H281DRAFT_01130 - transcriptional regulator, LysR family, at 1,274,798 to 1,275,676 _01130 H281DRAFT_01131: H281DRAFT_01131 - 3-oxoacyl-[acyl-carrier protein] reductase, at 1,275,851 to 1,276,597 _01131 H281DRAFT_01132: H281DRAFT_01132 - TRAP-type uncharacterized transport system, substrate-binding protein, at 1,277,128 to 1,278,468 _01132 Position (kb) 1275 1276 1277Strain fitness (log2 ratio) -2 -1 0 1 2at 1275.007 kb on + strand, within H281DRAFT_01130at 1275.007 kb on + strandat 1275.447 kb on - strandat 1275.783 kb on + strandat 1276.271 kb on - strand, within H281DRAFT_01131at 1276.340 kb on - strand, within H281DRAFT_01131at 1276.547 kb on - strandat 1276.603 kb on + strandat 1276.603 kb on + strandat 1276.603 kb on + strandat 1276.603 kb on + strandat 1276.704 kb on + strandat 1276.704 kb on + strandat 1276.705 kb on - strandat 1276.749 kb on - strandat 1276.927 kb on + strandat 1276.963 kb on + strandat 1276.995 kb on - strandat 1277.209 kb on + strandat 1277.210 kb on - strandat 1277.210 kb on - strandat 1277.210 kb on - strandat 1277.211 kb on + strandat 1277.211 kb on + strandat 1277.342 kb on - strandat 1277.343 kb on + strand, within H281DRAFT_01132at 1277.343 kb on + strand, within H281DRAFT_01132at 1277.518 kb on + strand, within H281DRAFT_01132at 1277.518 kb on + strand, within H281DRAFT_01132at 1277.519 kb on - strand, within H281DRAFT_01132at 1277.519 kb on - strand, within H281DRAFT_01132at 1277.519 kb on - strand, within H281DRAFT_01132at 1277.519 kb on - strand, within H281DRAFT_01132

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,275,007 + H281DRAFT_01130 0.24 -0.4
1,275,007 + +0.6
1,275,447 - +1.2
1,275,783 + -0.2
1,276,271 - H281DRAFT_01131 0.56 +0.4
1,276,340 - H281DRAFT_01131 0.65 +1.0
1,276,547 - -0.1
1,276,603 + +1.7
1,276,603 + -0.2
1,276,603 + -0.7
1,276,603 + -1.4
1,276,704 + +0.4
1,276,704 + +1.9
1,276,705 - -0.4
1,276,749 - +0.3
1,276,927 + +0.2
1,276,963 + +0.7
1,276,995 - +0.1
1,277,209 + +0.1
1,277,210 - +0.2
1,277,210 - -0.0
1,277,210 - +0.4
1,277,211 + +0.4
1,277,211 + -1.9
1,277,342 - -1.0
1,277,343 + H281DRAFT_01132 0.16 +0.2
1,277,343 + H281DRAFT_01132 0.16 -0.1
1,277,518 + H281DRAFT_01132 0.29 +0.1
1,277,518 + H281DRAFT_01132 0.29 +0.1
1,277,519 - H281DRAFT_01132 0.29 -1.2
1,277,519 - H281DRAFT_01132 0.29 +0.2
1,277,519 - H281DRAFT_01132 0.29 +0.0
1,277,519 - H281DRAFT_01132 0.29 +0.3

Or see this region's nucleotide sequence