Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01107

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01106 and H281DRAFT_01107 are separated by 49 nucleotidesH281DRAFT_01107 and H281DRAFT_01108 are separated by 54 nucleotides H281DRAFT_01106: H281DRAFT_01106 - Predicted ATPase, at 1,243,489 to 1,246,410 _01106 H281DRAFT_01107: H281DRAFT_01107 - hypothetical protein, at 1,246,460 to 1,248,307 _01107 H281DRAFT_01108: H281DRAFT_01108 - Glycosyltransferase involved in cell wall bisynthesis, at 1,248,362 to 1,249,417 _01108 Position (kb) 1246 1247 1248 1249Strain fitness (log2 ratio) -1 0 1at 1246.328 kb on + strandat 1246.585 kb on + strandat 1246.585 kb on + strandat 1247.541 kb on - strand, within H281DRAFT_01107at 1248.279 kb on + strandat 1248.415 kb on - strandat 1249.039 kb on - strand, within H281DRAFT_01108at 1249.172 kb on + strand, within H281DRAFT_01108

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,246,328 + -0.0
1,246,585 + +0.4
1,246,585 + -1.6
1,247,541 - H281DRAFT_01107 0.58 +0.6
1,248,279 + +0.4
1,248,415 - -0.9
1,249,039 - H281DRAFT_01108 0.64 +1.4
1,249,172 + H281DRAFT_01108 0.77 -0.0

Or see this region's nucleotide sequence