Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01076

Experiment: Malonic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01075 and H281DRAFT_01076 overlap by 4 nucleotidesH281DRAFT_01076 and H281DRAFT_01077 are separated by 39 nucleotides H281DRAFT_01075: H281DRAFT_01075 - benzoate 1,2-dioxygenase, alpha subunit, at 1,207,707 to 1,209,065 _01075 H281DRAFT_01076: H281DRAFT_01076 - benzoate/toluate 1,2-dioxygenase beta subunit, at 1,209,062 to 1,209,550 _01076 H281DRAFT_01077: H281DRAFT_01077 - benzoate/toluate 1,2-dioxygenase reductase subunit, at 1,209,590 to 1,210,612 _01077 Position (kb) 1209 1210Strain fitness (log2 ratio) -1 0 1at 1208.184 kb on + strand, within H281DRAFT_01075at 1208.324 kb on + strand, within H281DRAFT_01075at 1208.798 kb on - strand, within H281DRAFT_01075at 1208.798 kb on - strand, within H281DRAFT_01075at 1209.515 kb on + strandat 1209.580 kb on - strandat 1209.600 kb on - strandat 1209.780 kb on - strand, within H281DRAFT_01077at 1209.783 kb on + strand, within H281DRAFT_01077at 1209.783 kb on + strand, within H281DRAFT_01077at 1210.490 kb on + strand, within H281DRAFT_01077

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
remove
1,208,184 + H281DRAFT_01075 0.35 +1.5
1,208,324 + H281DRAFT_01075 0.45 +0.6
1,208,798 - H281DRAFT_01075 0.80 +0.9
1,208,798 - H281DRAFT_01075 0.80 -0.4
1,209,515 + -0.2
1,209,580 - -0.0
1,209,600 - +0.3
1,209,780 - H281DRAFT_01077 0.19 -0.2
1,209,783 + H281DRAFT_01077 0.19 -0.5
1,209,783 + H281DRAFT_01077 0.19 -0.2
1,210,490 + H281DRAFT_01077 0.88 +1.0

Or see this region's nucleotide sequence