Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00991

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00990 and H281DRAFT_00991 are separated by 37 nucleotidesH281DRAFT_00991 and H281DRAFT_00992 are separated by 5 nucleotides H281DRAFT_00990: H281DRAFT_00990 - serine hydroxymethyltransferase (EC 2.1.2.1), at 1,111,279 to 1,112,574 _00990 H281DRAFT_00991: H281DRAFT_00991 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,112,612 to 1,113,499 _00991 H281DRAFT_00992: H281DRAFT_00992 - Glycine/D-amino acid oxidase (deaminating), at 1,113,505 to 1,114,836 _00992 Position (kb) 1112 1113 1114Strain fitness (log2 ratio) -1 0 1 2at 1111.911 kb on + strandat 1112.753 kb on + strand, within H281DRAFT_00991at 1112.753 kb on + strand, within H281DRAFT_00991at 1112.931 kb on - strand, within H281DRAFT_00991at 1113.978 kb on + strand, within H281DRAFT_00992at 1114.026 kb on - strand, within H281DRAFT_00992at 1114.026 kb on - strand, within H281DRAFT_00992at 1114.042 kb on + strand, within H281DRAFT_00992

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,111,911 + +2.5
1,112,753 + H281DRAFT_00991 0.16 +0.6
1,112,753 + H281DRAFT_00991 0.16 +1.2
1,112,931 - H281DRAFT_00991 0.36 +0.7
1,113,978 + H281DRAFT_00992 0.36 +0.6
1,114,026 - H281DRAFT_00992 0.39 +0.9
1,114,026 - H281DRAFT_00992 0.39 -1.1
1,114,042 + H281DRAFT_00992 0.40 -0.9

Or see this region's nucleotide sequence