Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00510

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00509 and H281DRAFT_00510 are separated by 124 nucleotidesH281DRAFT_00510 and H281DRAFT_00511 are separated by 6 nucleotidesH281DRAFT_00511 and H281DRAFT_00512 are separated by 117 nucleotides H281DRAFT_00509: H281DRAFT_00509 - dihydrodipicolinate synthase, at 569,667 to 570,593 _00509 H281DRAFT_00510: H281DRAFT_00510 - Beta-barrel assembly machine subunit BamC, at 570,718 to 571,857 _00510 H281DRAFT_00511: H281DRAFT_00511 - Phosphoribosyl 1,2-cyclic phosphodiesterase, at 571,864 to 572,637 _00511 H281DRAFT_00512: H281DRAFT_00512 - hypothetical protein, at 572,755 to 573,453 _00512 Position (kb) 570 571 572Strain fitness (log2 ratio) -2 -1 0 1 2 3at 571.010 kb on - strand, within H281DRAFT_00510at 571.482 kb on + strand, within H281DRAFT_00510at 571.515 kb on + strand, within H281DRAFT_00510at 571.515 kb on + strand, within H281DRAFT_00510at 571.628 kb on - strand, within H281DRAFT_00510at 571.630 kb on + strand, within H281DRAFT_00510at 571.694 kb on - strand, within H281DRAFT_00510at 571.694 kb on - strand, within H281DRAFT_00510at 572.008 kb on - strand, within H281DRAFT_00511at 572.104 kb on + strand, within H281DRAFT_00511at 572.104 kb on + strand, within H281DRAFT_00511at 572.104 kb on + strand, within H281DRAFT_00511at 572.104 kb on + strand, within H281DRAFT_00511at 572.104 kb on + strand, within H281DRAFT_00511at 572.105 kb on - strand, within H281DRAFT_00511at 572.105 kb on - strand, within H281DRAFT_00511at 572.251 kb on + strand, within H281DRAFT_00511at 572.251 kb on + strand, within H281DRAFT_00511at 572.251 kb on + strand, within H281DRAFT_00511at 572.252 kb on - strand, within H281DRAFT_00511at 572.297 kb on + strand, within H281DRAFT_00511at 572.298 kb on - strand, within H281DRAFT_00511at 572.298 kb on - strand, within H281DRAFT_00511at 572.516 kb on + strand, within H281DRAFT_00511at 572.516 kb on + strand, within H281DRAFT_00511at 572.517 kb on - strand, within H281DRAFT_00511at 572.517 kb on - strand, within H281DRAFT_00511at 572.517 kb on - strand, within H281DRAFT_00511at 572.517 kb on - strand, within H281DRAFT_00511at 572.647 kb on + strandat 572.749 kb on + strandat 572.756 kb on + strandat 572.757 kb on - strandat 572.814 kb on - strandat 572.825 kb on + strand, within H281DRAFT_00512at 572.826 kb on - strand, within H281DRAFT_00512at 572.849 kb on + strand, within H281DRAFT_00512at 572.850 kb on - strand, within H281DRAFT_00512

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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571,010 - H281DRAFT_00510 0.26 +3.4
571,482 + H281DRAFT_00510 0.67 -0.1
571,515 + H281DRAFT_00510 0.70 -0.5
571,515 + H281DRAFT_00510 0.70 -0.2
571,628 - H281DRAFT_00510 0.80 -0.3
571,630 + H281DRAFT_00510 0.80 -1.3
571,694 - H281DRAFT_00510 0.86 +0.4
571,694 - H281DRAFT_00510 0.86 -0.2
572,008 - H281DRAFT_00511 0.19 +0.9
572,104 + H281DRAFT_00511 0.31 +0.5
572,104 + H281DRAFT_00511 0.31 +0.0
572,104 + H281DRAFT_00511 0.31 +0.3
572,104 + H281DRAFT_00511 0.31 -1.4
572,104 + H281DRAFT_00511 0.31 -0.4
572,105 - H281DRAFT_00511 0.31 -2.0
572,105 - H281DRAFT_00511 0.31 +0.2
572,251 + H281DRAFT_00511 0.50 +0.6
572,251 + H281DRAFT_00511 0.50 +0.1
572,251 + H281DRAFT_00511 0.50 -0.6
572,252 - H281DRAFT_00511 0.50 +1.5
572,297 + H281DRAFT_00511 0.56 +0.4
572,298 - H281DRAFT_00511 0.56 -0.8
572,298 - H281DRAFT_00511 0.56 -0.1
572,516 + H281DRAFT_00511 0.84 +0.2
572,516 + H281DRAFT_00511 0.84 -0.6
572,517 - H281DRAFT_00511 0.84 -0.2
572,517 - H281DRAFT_00511 0.84 +0.6
572,517 - H281DRAFT_00511 0.84 -0.2
572,517 - H281DRAFT_00511 0.84 -0.6
572,647 + +0.4
572,749 + +0.4
572,756 + -1.4
572,757 - +0.6
572,814 - -1.1
572,825 + H281DRAFT_00512 0.10 +0.4
572,826 - H281DRAFT_00512 0.10 -0.3
572,849 + H281DRAFT_00512 0.13 -1.2
572,850 - H281DRAFT_00512 0.14 -0.5

Or see this region's nucleotide sequence