Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08280

Experiment: m.b. Spectinomycin 0.00625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c08270 and PGA1_c08280 overlap by 1 nucleotidesPGA1_c08280 and PGA1_c08290 are separated by 538 nucleotides PGA1_c08270: PGA1_c08270 - Predicted periplasmic lipoprotein, at 856,020 to 857,144 _c08270 PGA1_c08280: PGA1_c08280 - Predicted thiol oxidoreductase, at 857,144 to 858,463 _c08280 PGA1_c08290: PGA1_c08290 - putative peptidase M75, at 859,002 to 860,270 _c08290 Position (kb) 857 858 859Strain fitness (log2 ratio) -2 -1 0 1at 856.222 kb on + strand, within PGA1_c08270at 856.222 kb on + strand, within PGA1_c08270at 856.253 kb on + strand, within PGA1_c08270at 856.261 kb on - strand, within PGA1_c08270at 856.335 kb on + strand, within PGA1_c08270at 856.348 kb on + strand, within PGA1_c08270at 856.358 kb on + strand, within PGA1_c08270at 856.358 kb on + strand, within PGA1_c08270at 856.366 kb on - strand, within PGA1_c08270at 856.394 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.474 kb on - strand, within PGA1_c08270at 856.474 kb on - strand, within PGA1_c08270at 856.476 kb on + strand, within PGA1_c08270at 856.479 kb on - strand, within PGA1_c08270at 856.508 kb on - strand, within PGA1_c08270at 856.569 kb on + strand, within PGA1_c08270at 856.569 kb on + strand, within PGA1_c08270at 856.569 kb on + strand, within PGA1_c08270at 856.577 kb on - strand, within PGA1_c08270at 856.823 kb on + strand, within PGA1_c08270at 856.892 kb on + strand, within PGA1_c08270at 856.898 kb on + strand, within PGA1_c08270at 856.911 kb on - strand, within PGA1_c08270at 856.911 kb on - strand, within PGA1_c08270at 856.911 kb on - strand, within PGA1_c08270at 856.913 kb on + strand, within PGA1_c08270at 856.921 kb on - strand, within PGA1_c08270at 856.983 kb on + strand, within PGA1_c08270at 856.983 kb on + strand, within PGA1_c08270at 856.991 kb on - strand, within PGA1_c08270at 857.028 kb on - strand, within PGA1_c08270at 857.098 kb on + strandat 857.110 kb on + strandat 857.120 kb on + strandat 857.126 kb on + strandat 857.134 kb on - strandat 857.160 kb on - strandat 857.165 kb on + strandat 857.188 kb on - strandat 857.207 kb on + strandat 857.259 kb on + strandat 857.302 kb on - strand, within PGA1_c08280at 857.370 kb on + strand, within PGA1_c08280at 857.387 kb on + strand, within PGA1_c08280at 857.388 kb on + strand, within PGA1_c08280at 857.432 kb on - strand, within PGA1_c08280at 857.442 kb on - strand, within PGA1_c08280at 857.511 kb on + strand, within PGA1_c08280at 857.511 kb on + strand, within PGA1_c08280at 857.519 kb on - strand, within PGA1_c08280at 857.519 kb on - strand, within PGA1_c08280at 857.519 kb on - strand, within PGA1_c08280at 857.524 kb on - strand, within PGA1_c08280at 857.602 kb on + strand, within PGA1_c08280at 857.607 kb on + strand, within PGA1_c08280at 857.617 kb on + strand, within PGA1_c08280at 857.711 kb on - strand, within PGA1_c08280at 857.826 kb on + strand, within PGA1_c08280at 857.931 kb on - strand, within PGA1_c08280at 857.983 kb on + strand, within PGA1_c08280at 857.991 kb on - strand, within PGA1_c08280at 858.111 kb on + strand, within PGA1_c08280at 858.190 kb on + strand, within PGA1_c08280at 858.201 kb on + strand, within PGA1_c08280at 858.247 kb on - strand, within PGA1_c08280at 858.286 kb on + strand, within PGA1_c08280at 858.294 kb on - strand, within PGA1_c08280at 858.303 kb on + strand, within PGA1_c08280at 858.334 kb on + strandat 858.334 kb on + strandat 858.363 kb on + strandat 858.376 kb on - strandat 858.423 kb on - strandat 858.428 kb on - strandat 858.487 kb on - strandat 858.495 kb on + strandat 858.495 kb on + strandat 858.595 kb on + strandat 858.603 kb on - strandat 858.603 kb on - strandat 858.603 kb on - strandat 858.605 kb on + strandat 858.660 kb on - strandat 858.670 kb on + strandat 858.675 kb on + strandat 858.689 kb on + strandat 858.724 kb on + strandat 858.830 kb on - strandat 858.830 kb on - strandat 858.841 kb on - strandat 858.871 kb on - strandat 858.936 kb on + strandat 859.126 kb on + strandat 859.209 kb on - strand, within PGA1_c08290at 859.211 kb on + strand, within PGA1_c08290at 859.415 kb on - strand, within PGA1_c08290at 859.447 kb on - strand, within PGA1_c08290at 859.454 kb on - strand, within PGA1_c08290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml
remove
856,222 + PGA1_c08270 0.18 -1.0
856,222 + PGA1_c08270 0.18 +0.3
856,253 + PGA1_c08270 0.21 -0.0
856,261 - PGA1_c08270 0.21 +0.2
856,335 + PGA1_c08270 0.28 +0.0
856,348 + PGA1_c08270 0.29 -1.1
856,358 + PGA1_c08270 0.30 +0.8
856,358 + PGA1_c08270 0.30 -1.3
856,366 - PGA1_c08270 0.31 -0.2
856,394 + PGA1_c08270 0.33 -1.4
856,466 + PGA1_c08270 0.40 -0.2
856,466 + PGA1_c08270 0.40 -2.5
856,466 + PGA1_c08270 0.40 -0.4
856,466 + PGA1_c08270 0.40 +0.0
856,474 - PGA1_c08270 0.40 -1.0
856,474 - PGA1_c08270 0.40 -0.3
856,476 + PGA1_c08270 0.41 -0.9
856,479 - PGA1_c08270 0.41 -1.7
856,508 - PGA1_c08270 0.43 -0.5
856,569 + PGA1_c08270 0.49 -0.6
856,569 + PGA1_c08270 0.49 -1.1
856,569 + PGA1_c08270 0.49 -1.0
856,577 - PGA1_c08270 0.50 -1.9
856,823 + PGA1_c08270 0.71 -0.8
856,892 + PGA1_c08270 0.78 -0.9
856,898 + PGA1_c08270 0.78 +0.1
856,911 - PGA1_c08270 0.79 -1.7
856,911 - PGA1_c08270 0.79 -0.6
856,911 - PGA1_c08270 0.79 -0.9
856,913 + PGA1_c08270 0.79 -1.1
856,921 - PGA1_c08270 0.80 -0.2
856,983 + PGA1_c08270 0.86 +1.6
856,983 + PGA1_c08270 0.86 -0.7
856,991 - PGA1_c08270 0.86 -0.6
857,028 - PGA1_c08270 0.90 -0.8
857,098 + -0.5
857,110 + -0.2
857,120 + +0.4
857,126 + -0.6
857,134 - -0.6
857,160 - -1.1
857,165 + -0.3
857,188 - -2.0
857,207 + +0.5
857,259 + -0.3
857,302 - PGA1_c08280 0.12 +0.4
857,370 + PGA1_c08280 0.17 -1.0
857,387 + PGA1_c08280 0.18 -0.3
857,388 + PGA1_c08280 0.18 +0.6
857,432 - PGA1_c08280 0.22 -0.2
857,442 - PGA1_c08280 0.23 -1.2
857,511 + PGA1_c08280 0.28 -0.9
857,511 + PGA1_c08280 0.28 +0.2
857,519 - PGA1_c08280 0.28 -0.9
857,519 - PGA1_c08280 0.28 -0.7
857,519 - PGA1_c08280 0.28 -1.0
857,524 - PGA1_c08280 0.29 -0.0
857,602 + PGA1_c08280 0.35 -1.1
857,607 + PGA1_c08280 0.35 -1.1
857,617 + PGA1_c08280 0.36 -0.1
857,711 - PGA1_c08280 0.43 -0.0
857,826 + PGA1_c08280 0.52 -0.1
857,931 - PGA1_c08280 0.60 -0.7
857,983 + PGA1_c08280 0.64 -0.8
857,991 - PGA1_c08280 0.64 -1.4
858,111 + PGA1_c08280 0.73 -1.0
858,190 + PGA1_c08280 0.79 +0.3
858,201 + PGA1_c08280 0.80 +0.4
858,247 - PGA1_c08280 0.84 -0.0
858,286 + PGA1_c08280 0.87 -0.5
858,294 - PGA1_c08280 0.87 -0.4
858,303 + PGA1_c08280 0.88 -0.6
858,334 + +0.4
858,334 + -1.1
858,363 + -0.3
858,376 - +0.3
858,423 - +0.2
858,428 - -0.8
858,487 - -0.6
858,495 + +0.9
858,495 + -1.5
858,595 + -2.1
858,603 - -1.0
858,603 - +0.2
858,603 - -0.1
858,605 + -1.4
858,660 - -1.1
858,670 + -0.7
858,675 + +0.4
858,689 + -0.6
858,724 + +0.1
858,830 - -0.1
858,830 - +0.7
858,841 - -0.8
858,871 - +0.7
858,936 + -1.5
859,126 + +0.2
859,209 - PGA1_c08290 0.16 +0.3
859,211 + PGA1_c08290 0.16 -0.1
859,415 - PGA1_c08290 0.33 +0.6
859,447 - PGA1_c08290 0.35 +0.1
859,454 - PGA1_c08290 0.36 +0.4

Or see this region's nucleotide sequence