Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07870

Experiment: m.b. Spectinomycin 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07860 and PGA1_c07870 are separated by 157 nucleotidesPGA1_c07870 and PGA1_c07880 are separated by 10 nucleotides PGA1_c07860: PGA1_c07860 - alpha-glucosides-binding periplasmic protein AglE, at 814,267 to 815,619 _c07860 PGA1_c07870: PGA1_c07870 - alpha-glucoside transport system permease protein AglF, at 815,777 to 816,784 _c07870 PGA1_c07880: PGA1_c07880 - alpha-glucoside transport system permease protein AglG, at 816,795 to 817,943 _c07880 Position (kb) 815 816 817Strain fitness (log2 ratio) -2 -1 0 1 2at 814.838 kb on - strand, within PGA1_c07860at 814.861 kb on + strand, within PGA1_c07860at 814.885 kb on + strand, within PGA1_c07860at 814.940 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 815.036 kb on + strand, within PGA1_c07860at 815.123 kb on + strand, within PGA1_c07860at 815.126 kb on + strand, within PGA1_c07860at 815.131 kb on - strand, within PGA1_c07860at 815.166 kb on + strand, within PGA1_c07860at 815.204 kb on + strand, within PGA1_c07860at 815.260 kb on + strand, within PGA1_c07860at 815.270 kb on + strand, within PGA1_c07860at 815.270 kb on + strand, within PGA1_c07860at 815.278 kb on - strand, within PGA1_c07860at 815.278 kb on - strand, within PGA1_c07860at 815.293 kb on - strand, within PGA1_c07860at 815.293 kb on - strand, within PGA1_c07860at 815.370 kb on - strand, within PGA1_c07860at 815.380 kb on + strand, within PGA1_c07860at 815.398 kb on + strand, within PGA1_c07860at 815.407 kb on + strand, within PGA1_c07860at 815.408 kb on - strand, within PGA1_c07860at 815.429 kb on + strand, within PGA1_c07860at 815.468 kb on + strand, within PGA1_c07860at 815.470 kb on + strand, within PGA1_c07860at 815.492 kb on + strandat 815.500 kb on - strandat 815.537 kb on - strandat 815.577 kb on + strandat 815.613 kb on + strandat 815.622 kb on - strandat 815.639 kb on - strandat 815.710 kb on - strandat 815.717 kb on + strandat 815.719 kb on + strandat 815.798 kb on - strandat 815.800 kb on + strandat 815.819 kb on - strandat 815.867 kb on - strandat 815.930 kb on - strand, within PGA1_c07870at 815.964 kb on + strand, within PGA1_c07870at 815.988 kb on - strand, within PGA1_c07870at 815.993 kb on - strand, within PGA1_c07870at 816.025 kb on + strand, within PGA1_c07870at 816.033 kb on - strand, within PGA1_c07870at 816.153 kb on + strand, within PGA1_c07870at 816.161 kb on - strand, within PGA1_c07870at 816.168 kb on + strand, within PGA1_c07870at 816.168 kb on + strand, within PGA1_c07870at 816.176 kb on - strand, within PGA1_c07870at 816.311 kb on + strand, within PGA1_c07870at 816.356 kb on - strand, within PGA1_c07870at 816.401 kb on + strand, within PGA1_c07870at 816.431 kb on - strand, within PGA1_c07870at 816.452 kb on - strand, within PGA1_c07870at 816.452 kb on - strand, within PGA1_c07870at 816.499 kb on + strand, within PGA1_c07870at 816.579 kb on + strand, within PGA1_c07870at 816.580 kb on - strand, within PGA1_c07870at 816.614 kb on + strand, within PGA1_c07870at 816.619 kb on + strand, within PGA1_c07870at 816.641 kb on - strand, within PGA1_c07870at 816.644 kb on + strand, within PGA1_c07870at 816.651 kb on - strand, within PGA1_c07870at 816.651 kb on - strand, within PGA1_c07870at 816.652 kb on - strand, within PGA1_c07870at 816.753 kb on - strandat 816.778 kb on + strandat 816.778 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.834 kb on + strandat 816.835 kb on - strandat 816.835 kb on - strandat 816.835 kb on - strandat 816.855 kb on - strandat 816.865 kb on - strandat 816.913 kb on + strand, within PGA1_c07880at 816.913 kb on + strand, within PGA1_c07880at 816.913 kb on + strand, within PGA1_c07880at 816.921 kb on - strand, within PGA1_c07880at 816.953 kb on + strand, within PGA1_c07880at 816.970 kb on + strand, within PGA1_c07880at 816.997 kb on + strand, within PGA1_c07880at 817.002 kb on + strand, within PGA1_c07880at 817.005 kb on - strand, within PGA1_c07880at 817.005 kb on - strand, within PGA1_c07880at 817.082 kb on - strand, within PGA1_c07880at 817.121 kb on - strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.131 kb on - strand, within PGA1_c07880at 817.131 kb on - strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.273 kb on - strand, within PGA1_c07880at 817.301 kb on + strand, within PGA1_c07880at 817.422 kb on + strand, within PGA1_c07880at 817.445 kb on - strand, within PGA1_c07880at 817.451 kb on + strand, within PGA1_c07880at 817.520 kb on - strand, within PGA1_c07880at 817.525 kb on - strand, within PGA1_c07880at 817.525 kb on - strand, within PGA1_c07880at 817.526 kb on - strand, within PGA1_c07880at 817.697 kb on - strand, within PGA1_c07880at 817.752 kb on + strand, within PGA1_c07880at 817.754 kb on - strand, within PGA1_c07880

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml
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814,838 - PGA1_c07860 0.42 +0.9
814,861 + PGA1_c07860 0.44 +0.1
814,885 + PGA1_c07860 0.46 +1.0
814,940 + PGA1_c07860 0.50 +0.6
814,964 + PGA1_c07860 0.52 -0.1
814,964 + PGA1_c07860 0.52 -0.3
814,964 + PGA1_c07860 0.52 +1.5
814,964 + PGA1_c07860 0.52 -0.1
814,964 + PGA1_c07860 0.52 +0.5
814,964 + PGA1_c07860 0.52 +0.9
814,972 - PGA1_c07860 0.52 +1.8
814,972 - PGA1_c07860 0.52 -1.3
814,972 - PGA1_c07860 0.52 +0.2
814,972 - PGA1_c07860 0.52 +1.2
814,972 - PGA1_c07860 0.52 +0.2
815,036 + PGA1_c07860 0.57 -0.6
815,123 + PGA1_c07860 0.63 +0.6
815,126 + PGA1_c07860 0.63 -0.1
815,131 - PGA1_c07860 0.64 +0.4
815,166 + PGA1_c07860 0.66 +0.2
815,204 + PGA1_c07860 0.69 +0.5
815,260 + PGA1_c07860 0.73 +0.4
815,270 + PGA1_c07860 0.74 +1.3
815,270 + PGA1_c07860 0.74 +1.3
815,278 - PGA1_c07860 0.75 +0.5
815,278 - PGA1_c07860 0.75 +0.5
815,293 - PGA1_c07860 0.76 +0.9
815,293 - PGA1_c07860 0.76 +0.2
815,370 - PGA1_c07860 0.82 -2.7
815,380 + PGA1_c07860 0.82 +0.3
815,398 + PGA1_c07860 0.84 +0.3
815,407 + PGA1_c07860 0.84 +0.4
815,408 - PGA1_c07860 0.84 +0.5
815,429 + PGA1_c07860 0.86 +0.7
815,468 + PGA1_c07860 0.89 +0.3
815,470 + PGA1_c07860 0.89 +0.8
815,492 + +0.6
815,500 - +0.4
815,537 - +0.9
815,577 + +0.3
815,613 + +0.0
815,622 - +0.2
815,639 - +0.4
815,710 - -0.4
815,717 + +1.2
815,719 + +0.4
815,798 - +0.2
815,800 + -0.6
815,819 - +0.3
815,867 - +1.7
815,930 - PGA1_c07870 0.15 +0.4
815,964 + PGA1_c07870 0.19 +0.3
815,988 - PGA1_c07870 0.21 +0.2
815,993 - PGA1_c07870 0.21 +0.9
816,025 + PGA1_c07870 0.25 +0.6
816,033 - PGA1_c07870 0.25 +0.2
816,153 + PGA1_c07870 0.37 +0.2
816,161 - PGA1_c07870 0.38 +1.0
816,168 + PGA1_c07870 0.39 +0.5
816,168 + PGA1_c07870 0.39 -0.3
816,176 - PGA1_c07870 0.40 +0.5
816,311 + PGA1_c07870 0.53 +0.7
816,356 - PGA1_c07870 0.57 +0.8
816,401 + PGA1_c07870 0.62 +1.1
816,431 - PGA1_c07870 0.65 +1.2
816,452 - PGA1_c07870 0.67 +0.8
816,452 - PGA1_c07870 0.67 +0.9
816,499 + PGA1_c07870 0.72 +1.3
816,579 + PGA1_c07870 0.80 +1.0
816,580 - PGA1_c07870 0.80 +0.2
816,614 + PGA1_c07870 0.83 -0.3
816,619 + PGA1_c07870 0.84 +0.7
816,641 - PGA1_c07870 0.86 +1.2
816,644 + PGA1_c07870 0.86 +0.5
816,651 - PGA1_c07870 0.87 -0.1
816,651 - PGA1_c07870 0.87 +1.1
816,652 - PGA1_c07870 0.87 +0.3
816,753 - -0.7
816,778 + +1.4
816,778 + +0.6
816,827 + -0.3
816,827 + -0.7
816,827 + +1.5
816,827 + -0.5
816,827 + +1.2
816,827 + +1.1
816,827 + +0.2
816,827 + +0.2
816,834 + +1.2
816,835 - +1.2
816,835 - +1.1
816,835 - +0.8
816,855 - +1.7
816,865 - +0.5
816,913 + PGA1_c07880 0.10 -0.5
816,913 + PGA1_c07880 0.10 +0.8
816,913 + PGA1_c07880 0.10 -1.0
816,921 - PGA1_c07880 0.11 +0.6
816,953 + PGA1_c07880 0.14 +0.6
816,970 + PGA1_c07880 0.15 +0.3
816,997 + PGA1_c07880 0.18 +0.1
817,002 + PGA1_c07880 0.18 +0.7
817,005 - PGA1_c07880 0.18 -1.1
817,005 - PGA1_c07880 0.18 +1.0
817,082 - PGA1_c07880 0.25 -0.1
817,121 - PGA1_c07880 0.28 -0.1
817,123 + PGA1_c07880 0.29 +1.5
817,123 + PGA1_c07880 0.29 +0.2
817,123 + PGA1_c07880 0.29 +0.3
817,131 - PGA1_c07880 0.29 +1.1
817,131 - PGA1_c07880 0.29 +0.5
817,213 + PGA1_c07880 0.36 +0.7
817,213 + PGA1_c07880 0.36 +0.1
817,213 + PGA1_c07880 0.36 +0.9
817,213 + PGA1_c07880 0.36 -0.4
817,273 - PGA1_c07880 0.42 +1.2
817,301 + PGA1_c07880 0.44 +0.7
817,422 + PGA1_c07880 0.55 +0.0
817,445 - PGA1_c07880 0.57 +0.8
817,451 + PGA1_c07880 0.57 +0.7
817,520 - PGA1_c07880 0.63 +0.5
817,525 - PGA1_c07880 0.64 +0.5
817,525 - PGA1_c07880 0.64 +0.4
817,526 - PGA1_c07880 0.64 +0.7
817,697 - PGA1_c07880 0.79 -0.5
817,752 + PGA1_c07880 0.83 -0.8
817,754 - PGA1_c07880 0.83 +0.2

Or see this region's nucleotide sequence