Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07510 and PGA1_c07520 are separated by 31 nucleotides PGA1_c07520 and PGA1_c07530 are separated by 64 nucleotides PGA1_c07530 and PGA1_c07540 are separated by 362 nucleotides
PGA1_c07510: PGA1_c07510 - DNA/RNA helicase-like protein, at 774,796 to 777,813
_c07510
PGA1_c07520: PGA1_c07520 - putative heat shock protein, at 777,845 to 778,210
_c07520
PGA1_c07530: PGA1_c07530 - ferredoxin FdxA, at 778,275 to 778,613
_c07530
PGA1_c07540: PGA1_c07540 - transcription factor carD-like protein, at 778,976 to 779,488
_c07540
Position (kb) 777
778
779 Strain fitness (log2 ratio) -2
-1
0
1 at 776.862 kb on - strand, within PGA1_c07510 at 776.896 kb on + strand, within PGA1_c07510 at 777.007 kb on + strand, within PGA1_c07510 at 777.007 kb on + strand, within PGA1_c07510 at 777.153 kb on - strand, within PGA1_c07510 at 777.267 kb on + strand, within PGA1_c07510 at 777.270 kb on - strand, within PGA1_c07510 at 777.304 kb on + strand, within PGA1_c07510 at 777.310 kb on - strand, within PGA1_c07510 at 777.521 kb on - strand at 777.528 kb on - strand at 777.544 kb on - strand at 777.608 kb on - strand at 777.714 kb on - strand at 777.717 kb on - strand at 777.720 kb on + strand at 777.720 kb on + strand at 777.768 kb on - strand at 777.792 kb on - strand at 777.796 kb on - strand at 777.900 kb on + strand, within PGA1_c07520 at 777.900 kb on + strand, within PGA1_c07520 at 777.900 kb on - strand, within PGA1_c07520 at 777.922 kb on + strand, within PGA1_c07520 at 777.930 kb on - strand, within PGA1_c07520 at 778.057 kb on + strand, within PGA1_c07520 at 778.060 kb on - strand, within PGA1_c07520 at 778.150 kb on - strand, within PGA1_c07520 at 778.184 kb on - strand at 778.633 kb on - strand at 778.650 kb on - strand at 778.738 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 776,862 - PGA1_c07510 0.68 -1.4 776,896 + PGA1_c07510 0.70 -1.5 777,007 + PGA1_c07510 0.73 -1.0 777,007 + PGA1_c07510 0.73 -0.0 777,153 - PGA1_c07510 0.78 -0.6 777,267 + PGA1_c07510 0.82 -0.6 777,270 - PGA1_c07510 0.82 +0.3 777,304 + PGA1_c07510 0.83 -1.3 777,310 - PGA1_c07510 0.83 -0.6 777,521 - -1.4 777,528 - -1.4 777,544 - -1.9 777,608 - -0.2 777,714 - -1.0 777,717 - -1.0 777,720 + -1.2 777,720 + -2.6 777,768 - +0.2 777,792 - -0.2 777,796 - +0.2 777,900 + PGA1_c07520 0.15 -1.1 777,900 + PGA1_c07520 0.15 +0.1 777,900 - PGA1_c07520 0.15 -0.2 777,922 + PGA1_c07520 0.21 -1.9 777,930 - PGA1_c07520 0.23 -0.2 778,057 + PGA1_c07520 0.58 -0.3 778,060 - PGA1_c07520 0.59 -0.4 778,150 - PGA1_c07520 0.83 +0.6 778,184 - -0.6 778,633 - -1.1 778,650 - -0.3 778,738 + +0.1
Or see this region's nucleotide sequence