Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04610 and PGA1_c04620 are separated by 187 nucleotides PGA1_c04620 and PGA1_c04630 are separated by 83 nucleotides
PGA1_c04610: PGA1_c04610 - haloacid dehalogenase, type II, at 454,421 to 455,107
_c04610
PGA1_c04620: PGA1_c04620 - peptidyl-prolyl cis-trans isomerase, FKBP-type, at 455,295 to 455,723
_c04620
PGA1_c04630: PGA1_c04630 - 2-nitropropane dioxygenase, at 455,807 to 456,901
_c04630
Position (kb) 455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 454.358 kb on - strand at 454.362 kb on + strand at 454.370 kb on - strand at 454.371 kb on + strand at 454.371 kb on + strand at 454.381 kb on + strand at 454.381 kb on + strand at 454.389 kb on - strand at 454.413 kb on + strand at 454.421 kb on - strand at 454.421 kb on - strand at 454.451 kb on - strand at 454.451 kb on - strand at 454.456 kb on - strand at 454.457 kb on + strand at 454.463 kb on + strand at 454.484 kb on - strand at 454.622 kb on + strand, within PGA1_c04610 at 454.628 kb on + strand, within PGA1_c04610 at 454.630 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.716 kb on + strand, within PGA1_c04610 at 454.747 kb on + strand, within PGA1_c04610 at 454.752 kb on + strand, within PGA1_c04610 at 454.755 kb on - strand, within PGA1_c04610 at 454.755 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.770 kb on + strand, within PGA1_c04610 at 454.806 kb on - strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.857 kb on - strand, within PGA1_c04610 at 454.887 kb on - strand, within PGA1_c04610 at 454.897 kb on - strand, within PGA1_c04610 at 454.897 kb on - strand, within PGA1_c04610 at 454.929 kb on + strand, within PGA1_c04610 at 454.934 kb on + strand, within PGA1_c04610 at 454.942 kb on + strand, within PGA1_c04610 at 454.963 kb on - strand, within PGA1_c04610 at 454.982 kb on - strand, within PGA1_c04610 at 454.988 kb on - strand, within PGA1_c04610 at 455.011 kb on + strand, within PGA1_c04610 at 455.087 kb on + strand at 455.112 kb on - strand at 455.135 kb on - strand at 455.144 kb on - strand at 455.207 kb on + strand at 455.215 kb on - strand at 455.215 kb on - strand at 455.215 kb on - strand at 455.246 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.257 kb on - strand at 455.257 kb on - strand at 455.283 kb on + strand at 455.300 kb on - strand at 455.338 kb on - strand, within PGA1_c04620 at 455.369 kb on - strand, within PGA1_c04620 at 455.371 kb on + strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.498 kb on - strand, within PGA1_c04620 at 455.498 kb on - strand, within PGA1_c04620 at 455.523 kb on + strand, within PGA1_c04620 at 455.641 kb on + strand, within PGA1_c04620 at 455.653 kb on + strand, within PGA1_c04620 at 455.655 kb on - strand, within PGA1_c04620 at 455.661 kb on - strand, within PGA1_c04620 at 455.661 kb on - strand, within PGA1_c04620 at 455.722 kb on - strand at 455.727 kb on - strand at 455.735 kb on - strand at 455.741 kb on - strand at 455.745 kb on - strand at 455.750 kb on - strand at 455.792 kb on + strand at 455.849 kb on + strand at 455.857 kb on - strand at 455.857 kb on - strand at 455.857 kb on - strand at 455.939 kb on - strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.999 kb on + strand, within PGA1_c04630 at 456.016 kb on - strand, within PGA1_c04630 at 456.029 kb on - strand, within PGA1_c04630 at 456.060 kb on - strand, within PGA1_c04630 at 456.078 kb on + strand, within PGA1_c04630 at 456.096 kb on - strand, within PGA1_c04630 at 456.099 kb on + strand, within PGA1_c04630 at 456.107 kb on - strand, within PGA1_c04630 at 456.107 kb on - strand, within PGA1_c04630 at 456.125 kb on + strand, within PGA1_c04630 at 456.125 kb on + strand, within PGA1_c04630 at 456.125 kb on + strand, within PGA1_c04630 at 456.125 kb on + strand, within PGA1_c04630 at 456.125 kb on + strand, within PGA1_c04630 at 456.133 kb on - strand, within PGA1_c04630 at 456.199 kb on - strand, within PGA1_c04630 at 456.218 kb on + strand, within PGA1_c04630 at 456.232 kb on - strand, within PGA1_c04630 at 456.307 kb on + strand, within PGA1_c04630 at 456.307 kb on - strand, within PGA1_c04630 at 456.312 kb on + strand, within PGA1_c04630 at 456.334 kb on - strand, within PGA1_c04630 at 456.347 kb on - strand, within PGA1_c04630 at 456.349 kb on + strand, within PGA1_c04630 at 456.351 kb on + strand, within PGA1_c04630 at 456.351 kb on + strand, within PGA1_c04630 at 456.351 kb on + strand, within PGA1_c04630 at 456.407 kb on + strand, within PGA1_c04630 at 456.415 kb on - strand, within PGA1_c04630 at 456.415 kb on - strand, within PGA1_c04630 at 456.415 kb on - strand, within PGA1_c04630 at 456.415 kb on - strand, within PGA1_c04630 at 456.457 kb on + strand, within PGA1_c04630 at 456.511 kb on - strand, within PGA1_c04630 at 456.513 kb on - strand, within PGA1_c04630 at 456.532 kb on + strand, within PGA1_c04630 at 456.532 kb on + strand, within PGA1_c04630 at 456.540 kb on - strand, within PGA1_c04630 at 456.540 kb on - strand, within PGA1_c04630 at 456.540 kb on - strand, within PGA1_c04630 at 456.555 kb on + strand, within PGA1_c04630 at 456.563 kb on - strand, within PGA1_c04630 at 456.590 kb on + strand, within PGA1_c04630 at 456.637 kb on - strand, within PGA1_c04630 at 456.662 kb on - strand, within PGA1_c04630 at 456.662 kb on - strand, within PGA1_c04630 at 456.709 kb on + strand, within PGA1_c04630 at 456.717 kb on - strand, within PGA1_c04630
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 454,358 - +0.8 454,362 + -0.7 454,370 - +1.3 454,371 + +0.4 454,371 + -0.4 454,381 + -0.7 454,381 + +0.7 454,389 - -0.3 454,413 + +0.3 454,421 - +0.8 454,421 - -0.9 454,451 - +0.0 454,451 - +1.5 454,456 - -0.2 454,457 + +0.4 454,463 + +0.3 454,484 - -1.0 454,622 + PGA1_c04610 0.29 -0.2 454,628 + PGA1_c04610 0.30 +0.2 454,630 - PGA1_c04610 0.30 -0.1 454,631 - PGA1_c04610 0.31 +1.5 454,631 - PGA1_c04610 0.31 -0.1 454,631 - PGA1_c04610 0.31 +0.6 454,716 + PGA1_c04610 0.43 +0.7 454,747 + PGA1_c04610 0.47 -0.1 454,752 + PGA1_c04610 0.48 +0.8 454,755 - PGA1_c04610 0.49 -1.1 454,755 - PGA1_c04610 0.49 -0.7 454,765 - PGA1_c04610 0.50 -0.7 454,765 - PGA1_c04610 0.50 -1.1 454,765 - PGA1_c04610 0.50 -1.0 454,770 + PGA1_c04610 0.51 -1.4 454,806 - PGA1_c04610 0.56 +0.0 454,808 + PGA1_c04610 0.56 +0.3 454,808 + PGA1_c04610 0.56 -0.6 454,808 + PGA1_c04610 0.56 +0.4 454,808 + PGA1_c04610 0.56 +0.2 454,816 - PGA1_c04610 0.57 -0.6 454,816 - PGA1_c04610 0.57 -1.3 454,816 - PGA1_c04610 0.57 -1.0 454,816 - PGA1_c04610 0.57 -0.6 454,816 - PGA1_c04610 0.57 -0.8 454,816 - PGA1_c04610 0.57 -0.1 454,857 - PGA1_c04610 0.63 -0.3 454,887 - PGA1_c04610 0.68 -1.2 454,897 - PGA1_c04610 0.69 +1.9 454,897 - PGA1_c04610 0.69 +0.3 454,929 + PGA1_c04610 0.74 +0.4 454,934 + PGA1_c04610 0.75 +0.5 454,942 + PGA1_c04610 0.76 +0.3 454,963 - PGA1_c04610 0.79 -2.0 454,982 - PGA1_c04610 0.82 +0.3 454,988 - PGA1_c04610 0.83 +0.4 455,011 + PGA1_c04610 0.86 -1.5 455,087 + -0.2 455,112 - +0.1 455,135 - +0.6 455,144 - +1.0 455,207 + -0.2 455,215 - +0.8 455,215 - +0.7 455,215 - +0.3 455,246 + -0.4 455,247 + -0.8 455,247 + +0.2 455,247 + -0.1 455,247 + +0.5 455,247 + +0.0 455,247 + -1.1 455,247 + +0.5 455,247 + -0.2 455,247 + -1.2 455,247 + +0.4 455,247 + -1.0 455,247 + +0.9 455,247 + -0.8 455,247 + -1.0 455,247 + +0.3 455,255 - -0.9 455,255 - +0.1 455,255 - -0.0 455,255 - -1.1 455,255 - +0.6 455,255 - -0.5 455,255 - +0.5 455,255 - +0.0 455,257 - -0.2 455,257 - +1.0 455,283 + -0.3 455,300 - -0.7 455,338 - PGA1_c04620 0.10 -2.7 455,369 - PGA1_c04620 0.17 -1.0 455,371 + PGA1_c04620 0.18 +0.1 455,379 - PGA1_c04620 0.20 -0.8 455,379 - PGA1_c04620 0.20 -0.2 455,379 - PGA1_c04620 0.20 +0.5 455,498 - PGA1_c04620 0.47 -0.9 455,498 - PGA1_c04620 0.47 -2.1 455,523 + PGA1_c04620 0.53 -1.4 455,641 + PGA1_c04620 0.81 +0.0 455,653 + PGA1_c04620 0.83 -1.8 455,655 - PGA1_c04620 0.84 -0.5 455,661 - PGA1_c04620 0.85 -0.3 455,661 - PGA1_c04620 0.85 +0.4 455,722 - -1.3 455,727 - -1.8 455,735 - +0.0 455,741 - +0.5 455,745 - +0.7 455,750 - -0.3 455,792 + +0.3 455,849 + -1.1 455,857 - -0.3 455,857 - -2.1 455,857 - -1.6 455,939 - PGA1_c04630 0.12 +0.1 455,961 + PGA1_c04630 0.14 -0.9 455,961 + PGA1_c04630 0.14 -0.9 455,961 + PGA1_c04630 0.14 +0.2 455,999 + PGA1_c04630 0.18 -0.1 456,016 - PGA1_c04630 0.19 -0.3 456,029 - PGA1_c04630 0.20 +0.1 456,060 - PGA1_c04630 0.23 -0.1 456,078 + PGA1_c04630 0.25 -0.8 456,096 - PGA1_c04630 0.26 +0.8 456,099 + PGA1_c04630 0.27 +0.3 456,107 - PGA1_c04630 0.27 +0.4 456,107 - PGA1_c04630 0.27 +0.4 456,125 + PGA1_c04630 0.29 +0.1 456,125 + PGA1_c04630 0.29 -0.5 456,125 + PGA1_c04630 0.29 +0.3 456,125 + PGA1_c04630 0.29 -1.2 456,125 + PGA1_c04630 0.29 -0.3 456,133 - PGA1_c04630 0.30 +1.0 456,199 - PGA1_c04630 0.36 -0.9 456,218 + PGA1_c04630 0.38 +0.5 456,232 - PGA1_c04630 0.39 +0.5 456,307 + PGA1_c04630 0.46 +0.6 456,307 - PGA1_c04630 0.46 -0.9 456,312 + PGA1_c04630 0.46 -1.4 456,334 - PGA1_c04630 0.48 -0.2 456,347 - PGA1_c04630 0.49 +1.5 456,349 + PGA1_c04630 0.49 +0.0 456,351 + PGA1_c04630 0.50 +0.2 456,351 + PGA1_c04630 0.50 -0.5 456,351 + PGA1_c04630 0.50 +0.2 456,407 + PGA1_c04630 0.55 -0.4 456,415 - PGA1_c04630 0.56 +0.2 456,415 - PGA1_c04630 0.56 +0.1 456,415 - PGA1_c04630 0.56 +0.6 456,415 - PGA1_c04630 0.56 -0.1 456,457 + PGA1_c04630 0.59 -2.0 456,511 - PGA1_c04630 0.64 -0.6 456,513 - PGA1_c04630 0.64 -0.8 456,532 + PGA1_c04630 0.66 -1.1 456,532 + PGA1_c04630 0.66 -0.4 456,540 - PGA1_c04630 0.67 +0.5 456,540 - PGA1_c04630 0.67 +0.8 456,540 - PGA1_c04630 0.67 -0.4 456,555 + PGA1_c04630 0.68 +0.0 456,563 - PGA1_c04630 0.69 +1.0 456,590 + PGA1_c04630 0.72 +0.2 456,637 - PGA1_c04630 0.76 +0.9 456,662 - PGA1_c04630 0.78 -0.7 456,662 - PGA1_c04630 0.78 +0.1 456,709 + PGA1_c04630 0.82 +0.1 456,717 - PGA1_c04630 0.83 +0.4
Or see this region's nucleotide sequence