Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01610 and PGA1_262p01620 are separated by 27 nucleotides PGA1_262p01620 and PGA1_262p01630 are separated by 68 nucleotides PGA1_262p01630 and PGA1_262p01640 are separated by 194 nucleotides PGA1_262p01640 and PGA1_262p01650 are separated by 122 nucleotides
PGA1_262p01610: PGA1_262p01610 - putative ABC transporter, permease protein, at 177,629 to 178,879
_262p01610
PGA1_262p01620: PGA1_262p01620 - Uncharacterized protein conserved in bacteria, at 178,907 to 179,407
_262p01620
PGA1_262p01630: PGA1_262p01630 - hypothetical protein, at 179,476 to 179,721
_262p01630
PGA1_262p01640: PGA1_262p01640 - hypothetical protein, at 179,916 to 180,152
_262p01640
PGA1_262p01650: PGA1_262p01650 - putative insertion sequence ATP binding protein, at 180,275 to 181,006
_262p01650
Position (kb) 179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.606 kb on + strand, within PGA1_262p01610 at 178.664 kb on - strand, within PGA1_262p01610 at 178.715 kb on + strand, within PGA1_262p01610 at 178.755 kb on + strand at 178.755 kb on + strand at 178.758 kb on - strand at 178.763 kb on - strand at 178.881 kb on + strand at 178.894 kb on - strand at 178.947 kb on - strand at 179.050 kb on - strand, within PGA1_262p01620 at 179.253 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.461 kb on + strand at 179.469 kb on - strand at 179.509 kb on + strand, within PGA1_262p01630 at 179.570 kb on + strand, within PGA1_262p01630 at 179.574 kb on - strand, within PGA1_262p01630 at 179.651 kb on + strand, within PGA1_262p01630 at 179.651 kb on + strand, within PGA1_262p01630 at 179.713 kb on + strand at 179.750 kb on - strand at 179.750 kb on - strand at 179.795 kb on + strand at 179.796 kb on + strand at 179.798 kb on - strand at 179.806 kb on + strand at 179.836 kb on + strand at 179.836 kb on - strand at 179.844 kb on - strand at 179.892 kb on + strand at 179.893 kb on + strand at 179.928 kb on + strand at 180.010 kb on - strand, within PGA1_262p01640 at 180.399 kb on + strand, within PGA1_262p01650
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 178,606 + PGA1_262p01610 0.78 -0.9 178,664 - PGA1_262p01610 0.83 -0.4 178,715 + PGA1_262p01610 0.87 +0.1 178,755 + +1.8 178,755 + -0.3 178,758 - -0.8 178,763 - -2.0 178,881 + -2.2 178,894 - +1.5 178,947 - -0.4 179,050 - PGA1_262p01620 0.29 +0.5 179,253 + PGA1_262p01620 0.69 +0.2 179,310 + PGA1_262p01620 0.80 -0.2 179,310 + PGA1_262p01620 0.80 +0.3 179,310 + PGA1_262p01620 0.80 -1.4 179,461 + +0.5 179,469 - +0.7 179,509 + PGA1_262p01630 0.13 +0.7 179,570 + PGA1_262p01630 0.38 +0.2 179,574 - PGA1_262p01630 0.40 -3.4 179,651 + PGA1_262p01630 0.71 +0.9 179,651 + PGA1_262p01630 0.71 +1.3 179,713 + -1.8 179,750 - -0.2 179,750 - +0.1 179,795 + -0.6 179,796 + +0.6 179,798 - +0.0 179,806 + -0.0 179,836 + -1.2 179,836 - -0.3 179,844 - -0.4 179,892 + +1.4 179,893 + -1.0 179,928 + +0.1 180,010 - PGA1_262p01640 0.40 +0.2 180,399 + PGA1_262p01650 0.17 +1.5
Or see this region's nucleotide sequence