Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00900 and PGA1_262p00910 overlap by 4 nucleotides PGA1_262p00910 and PGA1_262p00920 are separated by 83 nucleotides PGA1_262p00920 and PGA1_262p00930 overlap by 4 nucleotides
PGA1_262p00900: PGA1_262p00900 - ABC transporter, ATP-binding protein, at 100,354 to 101,850
_262p00900
PGA1_262p00910: PGA1_262p00910 - putative cation transort protein, at 101,847 to 102,404
_262p00910
PGA1_262p00920: PGA1_262p00920 - Membrane proteins related to metalloendopeptidases, at 102,488 to 103,174
_262p00920
PGA1_262p00930: PGA1_262p00930 - hypothetical protein, at 103,171 to 103,752
_262p00930
Position (kb) 101
102
103 Strain fitness (log2 ratio) -1
0
1 at 100.934 kb on + strand, within PGA1_262p00900 at 101.715 kb on - strand at 101.734 kb on + strand at 101.891 kb on + strand at 101.891 kb on + strand at 101.958 kb on - strand, within PGA1_262p00910 at 102.064 kb on + strand, within PGA1_262p00910 at 102.323 kb on - strand, within PGA1_262p00910 at 102.344 kb on + strand, within PGA1_262p00910 at 102.352 kb on - strand at 102.406 kb on + strand at 102.532 kb on - strand at 102.532 kb on - strand at 102.648 kb on + strand, within PGA1_262p00920 at 102.726 kb on + strand, within PGA1_262p00920 at 102.737 kb on + strand, within PGA1_262p00920 at 102.745 kb on - strand, within PGA1_262p00920 at 102.870 kb on + strand, within PGA1_262p00920 at 102.873 kb on - strand, within PGA1_262p00920 at 102.921 kb on + strand, within PGA1_262p00920 at 102.990 kb on + strand, within PGA1_262p00920 at 103.184 kb on + strand at 103.238 kb on - strand, within PGA1_262p00930 at 103.238 kb on - strand, within PGA1_262p00930 at 103.290 kb on + strand, within PGA1_262p00930
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 100,934 + PGA1_262p00900 0.39 -0.3 101,715 - +0.6 101,734 + +1.2 101,891 + +0.0 101,891 + +0.0 101,958 - PGA1_262p00910 0.20 +0.2 102,064 + PGA1_262p00910 0.39 +0.2 102,323 - PGA1_262p00910 0.85 +0.3 102,344 + PGA1_262p00910 0.89 +1.2 102,352 - -0.8 102,406 + +0.4 102,532 - -0.2 102,532 - -0.5 102,648 + PGA1_262p00920 0.23 +0.9 102,726 + PGA1_262p00920 0.35 -0.2 102,737 + PGA1_262p00920 0.36 +0.7 102,745 - PGA1_262p00920 0.37 -0.8 102,870 + PGA1_262p00920 0.56 +0.4 102,873 - PGA1_262p00920 0.56 +0.5 102,921 + PGA1_262p00920 0.63 +0.4 102,990 + PGA1_262p00920 0.73 -0.2 103,184 + -0.5 103,238 - PGA1_262p00930 0.12 +0.6 103,238 - PGA1_262p00930 0.12 -0.2 103,290 + PGA1_262p00930 0.20 -0.1
Or see this region's nucleotide sequence