Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35490 and PGA1_c35500 are separated by 41 nucleotides PGA1_c35500 and PGA1_c35510 are separated by 29 nucleotides PGA1_c35510 and PGA1_c35520 are separated by 10 nucleotides
PGA1_c35490: PGA1_c35490 - putative O-sialoglycoprotein endopeptidase, at 3,719,668 to 3,720,765
_c35490
PGA1_c35500: PGA1_c35500 - uoporphyrinogen-III synthase HemD-like protein, at 3,720,807 to 3,721,574
_c35500
PGA1_c35510: PGA1_c35510 - hypothetical protein, at 3,721,604 to 3,722,986
_c35510
PGA1_c35520: PGA1_c35520 - HemY-like protein, at 3,722,997 to 3,724,520
_c35520
Position (kb)
3721
3722
3723 Strain fitness (log2 ratio)
-2
-1
0
1 at 3720.767 kb on - strand at 3720.803 kb on + strand at 3720.804 kb on + strand at 3720.804 kb on + strand at 3720.809 kb on - strand at 3720.823 kb on + strand at 3720.825 kb on + strand at 3720.831 kb on - strand at 3720.840 kb on - strand at 3721.535 kb on - strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.555 kb on - strand at 3721.555 kb on - strand at 3721.593 kb on - strand at 3721.618 kb on - strand at 3721.865 kb on + strand, within PGA1_c35510 at 3721.969 kb on + strand, within PGA1_c35510 at 3722.356 kb on + strand, within PGA1_c35510 at 3722.751 kb on + strand, within PGA1_c35510 at 3722.929 kb on - strand at 3723.112 kb on - strand at 3723.119 kb on + strand at 3723.164 kb on - strand, within PGA1_c35520 at 3723.253 kb on + strand, within PGA1_c35520 at 3723.341 kb on + strand, within PGA1_c35520 at 3723.575 kb on + strand, within PGA1_c35520 at 3723.591 kb on + strand, within PGA1_c35520 at 3723.665 kb on + strand, within PGA1_c35520 at 3723.714 kb on + strand, within PGA1_c35520 at 3723.714 kb on + strand, within PGA1_c35520 at 3723.839 kb on + strand, within PGA1_c35520 at 3723.915 kb on + strand, within PGA1_c35520 at 3723.915 kb on + strand, within PGA1_c35520 at 3723.923 kb on - strand, within PGA1_c35520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 3,720,767 - -0.7 3,720,803 + -0.3 3,720,804 + +0.4 3,720,804 + -0.9 3,720,809 - +0.7 3,720,823 + -0.1 3,720,825 + +0.3 3,720,831 - +1.5 3,720,840 - +0.1 3,721,535 - -0.7 3,721,547 + -1.0 3,721,547 + +1.1 3,721,547 + +1.2 3,721,547 + -0.0 3,721,547 + +1.1 3,721,547 + +0.5 3,721,547 + +0.3 3,721,547 + -0.6 3,721,547 + +0.8 3,721,547 + +0.0 3,721,547 + +0.2 3,721,547 + +0.2 3,721,547 + -2.3 3,721,547 + -0.0 3,721,547 + +0.7 3,721,547 + +0.5 3,721,547 + +1.1 3,721,547 + +0.4 3,721,555 - -0.1 3,721,555 - -0.4 3,721,593 - -0.3 3,721,618 - -0.7 3,721,865 + PGA1_c35510 0.19 -1.1 3,721,969 + PGA1_c35510 0.26 -2.5 3,722,356 + PGA1_c35510 0.54 -1.5 3,722,751 + PGA1_c35510 0.83 -2.6 3,722,929 - -0.8 3,723,112 - -0.9 3,723,119 + -0.8 3,723,164 - PGA1_c35520 0.11 -1.9 3,723,253 + PGA1_c35520 0.17 -0.7 3,723,341 + PGA1_c35520 0.23 +1.1 3,723,575 + PGA1_c35520 0.38 -0.4 3,723,591 + PGA1_c35520 0.39 -0.2 3,723,665 + PGA1_c35520 0.44 +0.2 3,723,714 + PGA1_c35520 0.47 -0.7 3,723,714 + PGA1_c35520 0.47 -0.1 3,723,839 + PGA1_c35520 0.55 -0.6 3,723,915 + PGA1_c35520 0.60 +0.4 3,723,915 + PGA1_c35520 0.60 -0.6 3,723,923 - PGA1_c35520 0.61 +0.1
Or see this region's nucleotide sequence