Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26880 and PGA1_c26890 are separated by 66 nucleotides PGA1_c26890 and PGA1_c26900 are separated by 328 nucleotides
PGA1_c26880: PGA1_c26880 - putative iron transport system permease protein, at 2,804,947 to 2,806,026
_c26880
PGA1_c26890: PGA1_c26890 - putative endoribonuclease, at 2,806,093 to 2,806,440
_c26890
PGA1_c26900: PGA1_c26900 - putative lipoprotein, at 2,806,769 to 2,807,800
_c26900
Position (kb)
2806
2807 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2805.348 kb on + strand, within PGA1_c26880 at 2806.172 kb on + strand, within PGA1_c26890 at 2806.178 kb on + strand, within PGA1_c26890 at 2806.196 kb on + strand, within PGA1_c26890 at 2806.204 kb on - strand, within PGA1_c26890 at 2806.257 kb on - strand, within PGA1_c26890 at 2806.264 kb on + strand, within PGA1_c26890 at 2806.285 kb on + strand, within PGA1_c26890 at 2806.337 kb on - strand, within PGA1_c26890 at 2806.337 kb on - strand, within PGA1_c26890 at 2806.442 kb on - strand at 2806.477 kb on + strand at 2806.480 kb on - strand at 2806.625 kb on + strand at 2806.633 kb on - strand at 2806.640 kb on - strand at 2806.679 kb on + strand at 2806.705 kb on - strand at 2806.755 kb on - strand at 2806.850 kb on - strand at 2806.850 kb on - strand at 2806.868 kb on + strand at 2806.881 kb on + strand, within PGA1_c26900 at 2806.881 kb on + strand, within PGA1_c26900 at 2806.889 kb on - strand, within PGA1_c26900 at 2806.938 kb on - strand, within PGA1_c26900 at 2806.987 kb on + strand, within PGA1_c26900 at 2806.987 kb on + strand, within PGA1_c26900 at 2806.989 kb on + strand, within PGA1_c26900 at 2807.019 kb on + strand, within PGA1_c26900 at 2807.025 kb on + strand, within PGA1_c26900 at 2807.129 kb on + strand, within PGA1_c26900 at 2807.166 kb on + strand, within PGA1_c26900 at 2807.176 kb on + strand, within PGA1_c26900 at 2807.181 kb on + strand, within PGA1_c26900 at 2807.181 kb on + strand, within PGA1_c26900 at 2807.189 kb on - strand, within PGA1_c26900 at 2807.222 kb on - strand, within PGA1_c26900 at 2807.222 kb on - strand, within PGA1_c26900 at 2807.325 kb on - strand, within PGA1_c26900 at 2807.382 kb on + strand, within PGA1_c26900 at 2807.390 kb on - strand, within PGA1_c26900 at 2807.431 kb on - strand, within PGA1_c26900 at 2807.438 kb on + strand, within PGA1_c26900 at 2807.438 kb on + strand, within PGA1_c26900
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 2,805,348 + PGA1_c26880 0.37 -1.5 2,806,172 + PGA1_c26890 0.23 +0.4 2,806,178 + PGA1_c26890 0.24 -0.3 2,806,196 + PGA1_c26890 0.30 -0.2 2,806,204 - PGA1_c26890 0.32 +1.1 2,806,257 - PGA1_c26890 0.47 -0.7 2,806,264 + PGA1_c26890 0.49 +3.0 2,806,285 + PGA1_c26890 0.55 +0.9 2,806,337 - PGA1_c26890 0.70 -0.2 2,806,337 - PGA1_c26890 0.70 +0.9 2,806,442 - -0.3 2,806,477 + +0.3 2,806,480 - +0.6 2,806,625 + +0.0 2,806,633 - +0.0 2,806,640 - -0.9 2,806,679 + -1.0 2,806,705 - +0.4 2,806,755 - +0.6 2,806,850 - -0.0 2,806,850 - +0.3 2,806,868 + +1.1 2,806,881 + PGA1_c26900 0.11 -1.6 2,806,881 + PGA1_c26900 0.11 -0.1 2,806,889 - PGA1_c26900 0.12 +0.7 2,806,938 - PGA1_c26900 0.16 +0.9 2,806,987 + PGA1_c26900 0.21 +0.7 2,806,987 + PGA1_c26900 0.21 +0.8 2,806,989 + PGA1_c26900 0.21 -0.5 2,807,019 + PGA1_c26900 0.24 +0.7 2,807,025 + PGA1_c26900 0.25 -0.2 2,807,129 + PGA1_c26900 0.35 +0.5 2,807,166 + PGA1_c26900 0.38 -0.6 2,807,176 + PGA1_c26900 0.39 +0.3 2,807,181 + PGA1_c26900 0.40 +0.0 2,807,181 + PGA1_c26900 0.40 -0.9 2,807,189 - PGA1_c26900 0.41 -0.1 2,807,222 - PGA1_c26900 0.44 +0.7 2,807,222 - PGA1_c26900 0.44 -0.0 2,807,325 - PGA1_c26900 0.54 -0.4 2,807,382 + PGA1_c26900 0.59 -0.1 2,807,390 - PGA1_c26900 0.60 +0.1 2,807,431 - PGA1_c26900 0.64 -0.5 2,807,438 + PGA1_c26900 0.65 +1.5 2,807,438 + PGA1_c26900 0.65 +1.1
Or see this region's nucleotide sequence