Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17120 and PGA1_c17130 are separated by 144 nucleotides PGA1_c17130 and PGA1_c17140 are separated by 46 nucleotides PGA1_c17140 and PGA1_c17160 are separated by 67 nucleotides PGA1_c17160 and PGA1_c17170 are separated by 6 nucleotides
PGA1_c17120: PGA1_c17120 - phosphoribosylformylglycinamidine synthase 2, at 1,789,490 to 1,791,655
_c17120
PGA1_c17130: PGA1_c17130 - hypothetical protein, at 1,791,800 to 1,792,132
_c17130
PGA1_c17140: PGA1_c17140 - hypothetical protein, at 1,792,179 to 1,792,709
_c17140
PGA1_c17160: PGA1_c17160 - Stress-induced morphogen (activity unknown), at 1,792,777 to 1,793,013
_c17160
PGA1_c17170: PGA1_c17170 - hypothetical protein, at 1,793,020 to 1,793,250
_c17170
Position (kb)
1791
1792
1793 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1790.877 kb on + strand, within PGA1_c17120 at 1791.176 kb on - strand, within PGA1_c17120 at 1791.197 kb on + strand, within PGA1_c17120 at 1791.330 kb on + strand, within PGA1_c17120 at 1791.340 kb on + strand, within PGA1_c17120 at 1791.384 kb on - strand, within PGA1_c17120 at 1791.476 kb on + strand at 1791.524 kb on + strand at 1791.532 kb on - strand at 1791.644 kb on + strand at 1791.644 kb on + strand at 1791.644 kb on + strand at 1791.644 kb on + strand at 1791.644 kb on + strand at 1791.644 kb on + strand at 1791.644 kb on + strand at 1791.644 kb on + strand at 1791.644 kb on + strand at 1791.644 kb on + strand at 1791.644 kb on + strand at 1791.652 kb on - strand at 1791.652 kb on - strand at 1791.652 kb on - strand at 1791.652 kb on - strand at 1791.652 kb on - strand at 1791.652 kb on - strand at 1791.652 kb on - strand at 1791.770 kb on + strand at 1791.772 kb on + strand at 1791.817 kb on - strand at 1791.819 kb on - strand at 1791.842 kb on - strand, within PGA1_c17130 at 1791.844 kb on + strand, within PGA1_c17130 at 1791.849 kb on - strand, within PGA1_c17130 at 1791.907 kb on - strand, within PGA1_c17130 at 1791.920 kb on + strand, within PGA1_c17130 at 1791.938 kb on + strand, within PGA1_c17130 at 1791.960 kb on + strand, within PGA1_c17130 at 1791.970 kb on + strand, within PGA1_c17130 at 1792.000 kb on + strand, within PGA1_c17130 at 1792.023 kb on + strand, within PGA1_c17130 at 1792.036 kb on + strand, within PGA1_c17130 at 1792.049 kb on - strand, within PGA1_c17130 at 1792.144 kb on - strand at 1792.158 kb on + strand at 1792.158 kb on + strand at 1792.166 kb on - strand at 1792.166 kb on - strand at 1792.245 kb on - strand, within PGA1_c17140 at 1792.247 kb on - strand, within PGA1_c17140 at 1792.286 kb on + strand, within PGA1_c17140 at 1792.293 kb on + strand, within PGA1_c17140 at 1792.298 kb on + strand, within PGA1_c17140 at 1792.301 kb on - strand, within PGA1_c17140 at 1792.303 kb on + strand, within PGA1_c17140 at 1792.303 kb on + strand, within PGA1_c17140 at 1792.306 kb on - strand, within PGA1_c17140 at 1792.306 kb on - strand, within PGA1_c17140 at 1792.311 kb on - strand, within PGA1_c17140 at 1792.311 kb on - strand, within PGA1_c17140 at 1792.311 kb on - strand, within PGA1_c17140 at 1792.311 kb on - strand, within PGA1_c17140 at 1792.357 kb on + strand, within PGA1_c17140 at 1792.357 kb on + strand, within PGA1_c17140 at 1792.357 kb on + strand, within PGA1_c17140 at 1792.357 kb on + strand, within PGA1_c17140 at 1792.430 kb on + strand, within PGA1_c17140 at 1792.474 kb on + strand, within PGA1_c17140 at 1792.482 kb on - strand, within PGA1_c17140 at 1792.482 kb on - strand, within PGA1_c17140 at 1792.482 kb on - strand, within PGA1_c17140 at 1792.537 kb on + strand, within PGA1_c17140 at 1792.553 kb on - strand, within PGA1_c17140 at 1792.589 kb on - strand, within PGA1_c17140 at 1792.659 kb on + strand at 1792.659 kb on + strand at 1792.723 kb on + strand at 1792.723 kb on + strand at 1792.723 kb on + strand at 1792.723 kb on + strand at 1792.731 kb on - strand at 1792.772 kb on + strand at 1792.820 kb on - strand, within PGA1_c17160 at 1792.858 kb on - strand, within PGA1_c17160 at 1792.982 kb on + strand, within PGA1_c17160 at 1792.982 kb on + strand, within PGA1_c17160 at 1792.990 kb on - strand at 1793.028 kb on + strand at 1793.046 kb on - strand, within PGA1_c17170 at 1793.056 kb on + strand, within PGA1_c17170
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 1,790,877 + PGA1_c17120 0.64 +0.6 1,791,176 - PGA1_c17120 0.78 -2.4 1,791,197 + PGA1_c17120 0.79 -1.7 1,791,330 + PGA1_c17120 0.85 -1.6 1,791,340 + PGA1_c17120 0.85 -2.6 1,791,384 - PGA1_c17120 0.87 -0.9 1,791,476 + -1.8 1,791,524 + -1.9 1,791,532 - -2.1 1,791,644 + -1.1 1,791,644 + +0.2 1,791,644 + +0.4 1,791,644 + -0.1 1,791,644 + -0.3 1,791,644 + -1.1 1,791,644 + -0.1 1,791,644 + -1.5 1,791,644 + -0.1 1,791,644 + +0.3 1,791,644 + -0.5 1,791,652 - -0.4 1,791,652 - +0.2 1,791,652 - -0.5 1,791,652 - -0.0 1,791,652 - +0.4 1,791,652 - +0.7 1,791,652 - +0.5 1,791,770 + -0.9 1,791,772 + -1.4 1,791,817 - -2.9 1,791,819 - -0.4 1,791,842 - PGA1_c17130 0.13 -0.2 1,791,844 + PGA1_c17130 0.13 +0.5 1,791,849 - PGA1_c17130 0.15 +0.6 1,791,907 - PGA1_c17130 0.32 +0.5 1,791,920 + PGA1_c17130 0.36 -0.3 1,791,938 + PGA1_c17130 0.41 +0.6 1,791,960 + PGA1_c17130 0.48 +0.3 1,791,970 + PGA1_c17130 0.51 +0.8 1,792,000 + PGA1_c17130 0.60 +0.3 1,792,023 + PGA1_c17130 0.67 +1.0 1,792,036 + PGA1_c17130 0.71 -0.6 1,792,049 - PGA1_c17130 0.75 +0.4 1,792,144 - -0.1 1,792,158 + +1.8 1,792,158 + +0.7 1,792,166 - -0.1 1,792,166 - -0.7 1,792,245 - PGA1_c17140 0.12 +2.3 1,792,247 - PGA1_c17140 0.13 +0.1 1,792,286 + PGA1_c17140 0.20 -1.0 1,792,293 + PGA1_c17140 0.21 -0.0 1,792,298 + PGA1_c17140 0.22 -0.3 1,792,301 - PGA1_c17140 0.23 -0.6 1,792,303 + PGA1_c17140 0.23 -0.2 1,792,303 + PGA1_c17140 0.23 -0.6 1,792,306 - PGA1_c17140 0.24 +0.5 1,792,306 - PGA1_c17140 0.24 +0.3 1,792,311 - PGA1_c17140 0.25 +0.4 1,792,311 - PGA1_c17140 0.25 -1.2 1,792,311 - PGA1_c17140 0.25 +1.1 1,792,311 - PGA1_c17140 0.25 +0.6 1,792,357 + PGA1_c17140 0.34 +0.6 1,792,357 + PGA1_c17140 0.34 -1.4 1,792,357 + PGA1_c17140 0.34 +0.5 1,792,357 + PGA1_c17140 0.34 +0.1 1,792,430 + PGA1_c17140 0.47 -1.7 1,792,474 + PGA1_c17140 0.56 +0.2 1,792,482 - PGA1_c17140 0.57 +0.1 1,792,482 - PGA1_c17140 0.57 +0.4 1,792,482 - PGA1_c17140 0.57 +1.5 1,792,537 + PGA1_c17140 0.67 +0.4 1,792,553 - PGA1_c17140 0.70 -0.1 1,792,589 - PGA1_c17140 0.77 -0.1 1,792,659 + +0.3 1,792,659 + -0.9 1,792,723 + +0.9 1,792,723 + -0.5 1,792,723 + +1.2 1,792,723 + -0.9 1,792,731 - +0.4 1,792,772 + +0.9 1,792,820 - PGA1_c17160 0.18 +0.4 1,792,858 - PGA1_c17160 0.34 -0.5 1,792,982 + PGA1_c17160 0.86 -0.2 1,792,982 + PGA1_c17160 0.86 -0.4 1,792,990 - -0.7 1,793,028 + -0.3 1,793,046 - PGA1_c17170 0.11 -0.9 1,793,056 + PGA1_c17170 0.16 +0.3
Or see this region's nucleotide sequence