Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1591 and HP15_1592 overlap by 8 nucleotides HP15_1592 and HP15_1593 are separated by 13 nucleotides HP15_1593 and HP15_1594 are separated by 91 nucleotides
HP15_1591: HP15_1591 - conserved hypothetical protein, at 1,685,112 to 1,686,512
_1591
HP15_1592: HP15_1592 - conserved hypothetical protein, at 1,686,505 to 1,687,074
_1592
HP15_1593: HP15_1593 - patatin-like phospholipase domain-containing protein, at 1,687,088 to 1,688,560
_1593
HP15_1594: HP15_1594 - hypothetical protein, at 1,688,652 to 1,690,559
_1594
Position (kb) 1687
1688
1689 Strain fitness (log2 ratio) -1
0
1 at 1686.170 kb on - strand, within HP15_1591 at 1686.238 kb on + strand, within HP15_1591 at 1686.442 kb on + strand at 1686.498 kb on - strand at 1686.605 kb on + strand, within HP15_1592 at 1686.820 kb on - strand, within HP15_1592 at 1686.835 kb on + strand, within HP15_1592 at 1686.924 kb on - strand, within HP15_1592 at 1686.933 kb on + strand, within HP15_1592 at 1687.001 kb on - strand, within HP15_1592 at 1687.084 kb on - strand at 1687.338 kb on + strand, within HP15_1593 at 1687.346 kb on - strand, within HP15_1593 at 1687.376 kb on - strand, within HP15_1593 at 1687.376 kb on - strand, within HP15_1593 at 1687.508 kb on + strand, within HP15_1593 at 1687.511 kb on - strand, within HP15_1593 at 1687.511 kb on - strand, within HP15_1593 at 1687.759 kb on + strand, within HP15_1593 at 1687.807 kb on + strand, within HP15_1593 at 1687.873 kb on + strand, within HP15_1593 at 1687.880 kb on + strand, within HP15_1593 at 1688.070 kb on - strand, within HP15_1593 at 1688.098 kb on + strand, within HP15_1593 at 1688.101 kb on + strand, within HP15_1593 at 1688.122 kb on - strand, within HP15_1593 at 1688.434 kb on + strand at 1688.456 kb on + strand at 1688.489 kb on - strand at 1688.541 kb on - strand at 1688.633 kb on + strand at 1688.763 kb on + strand at 1688.841 kb on + strand at 1688.860 kb on - strand, within HP15_1594 at 1688.860 kb on - strand, within HP15_1594 at 1688.881 kb on - strand, within HP15_1594 at 1688.907 kb on - strand, within HP15_1594 at 1688.961 kb on + strand, within HP15_1594 at 1689.099 kb on + strand, within HP15_1594 at 1689.099 kb on + strand, within HP15_1594 at 1689.099 kb on + strand, within HP15_1594 at 1689.107 kb on - strand, within HP15_1594 at 1689.107 kb on - strand, within HP15_1594 at 1689.107 kb on - strand, within HP15_1594 at 1689.107 kb on - strand, within HP15_1594 at 1689.275 kb on + strand, within HP15_1594 at 1689.524 kb on - strand, within HP15_1594 at 1689.526 kb on + strand, within HP15_1594
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml remove 1,686,170 - HP15_1591 0.76 +0.2 1,686,238 + HP15_1591 0.80 +0.3 1,686,442 + +1.1 1,686,498 - +0.1 1,686,605 + HP15_1592 0.18 -0.2 1,686,820 - HP15_1592 0.55 -0.4 1,686,835 + HP15_1592 0.58 -0.4 1,686,924 - HP15_1592 0.74 -0.7 1,686,933 + HP15_1592 0.75 -0.1 1,687,001 - HP15_1592 0.87 +0.1 1,687,084 - -0.4 1,687,338 + HP15_1593 0.17 +0.1 1,687,346 - HP15_1593 0.18 -0.6 1,687,376 - HP15_1593 0.20 -0.9 1,687,376 - HP15_1593 0.20 +0.1 1,687,508 + HP15_1593 0.29 -1.0 1,687,511 - HP15_1593 0.29 -0.3 1,687,511 - HP15_1593 0.29 +0.1 1,687,759 + HP15_1593 0.46 -1.6 1,687,807 + HP15_1593 0.49 -1.0 1,687,873 + HP15_1593 0.53 +0.0 1,687,880 + HP15_1593 0.54 -0.7 1,688,070 - HP15_1593 0.67 -0.4 1,688,098 + HP15_1593 0.69 +0.3 1,688,101 + HP15_1593 0.69 +0.3 1,688,122 - HP15_1593 0.70 -1.0 1,688,434 + +0.0 1,688,456 + +0.2 1,688,489 - +0.0 1,688,541 - -0.1 1,688,633 + +0.1 1,688,763 + +0.1 1,688,841 + -0.3 1,688,860 - HP15_1594 0.11 -0.2 1,688,860 - HP15_1594 0.11 +0.2 1,688,881 - HP15_1594 0.12 +0.0 1,688,907 - HP15_1594 0.13 +0.0 1,688,961 + HP15_1594 0.16 +0.5 1,689,099 + HP15_1594 0.23 -0.2 1,689,099 + HP15_1594 0.23 -0.4 1,689,099 + HP15_1594 0.23 -0.0 1,689,107 - HP15_1594 0.24 +0.2 1,689,107 - HP15_1594 0.24 -0.1 1,689,107 - HP15_1594 0.24 +0.3 1,689,107 - HP15_1594 0.24 +1.1 1,689,275 + HP15_1594 0.33 -0.3 1,689,524 - HP15_1594 0.46 +0.3 1,689,526 + HP15_1594 0.46 -0.2
Or see this region's nucleotide sequence