Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26085

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26080 and BWI76_RS26085 are separated by 84 nucleotidesBWI76_RS26085 and BWI76_RS26090 are separated by 54 nucleotidesBWI76_RS26090 and BWI76_RS26095 are separated by 19 nucleotidesBWI76_RS26095 and BWI76_RS26100 are separated by 10 nucleotides BWI76_RS26080: BWI76_RS26080 - cell division protein DamX, at 5,388,780 to 5,390,093 _RS26080 BWI76_RS26085: BWI76_RS26085 - 3-dehydroquinate synthase, at 5,390,178 to 5,391,272 _RS26085 BWI76_RS26090: BWI76_RS26090 - shikimate kinase, at 5,391,327 to 5,391,848 _RS26090 BWI76_RS26095: BWI76_RS26095 - shikimate kinase, at 5,391,868 to 5,392,106 _RS26095 BWI76_RS26100: BWI76_RS26100 - DNA transporter HofQ, at 5,392,117 to 5,393,358 _RS26100 Position (kb) 5390 5391 5392Strain fitness (log2 ratio) -2 -1 0 1at 5389.503 kb on + strand, within BWI76_RS26080at 5389.535 kb on - strand, within BWI76_RS26080at 5389.670 kb on + strand, within BWI76_RS26080at 5389.675 kb on + strand, within BWI76_RS26080at 5390.224 kb on - strandat 5390.276 kb on - strandat 5390.276 kb on - strandat 5390.737 kb on - strand, within BWI76_RS26085at 5391.051 kb on - strand, within BWI76_RS26085at 5391.138 kb on - strand, within BWI76_RS26085at 5391.913 kb on - strand, within BWI76_RS26095at 5391.929 kb on - strand, within BWI76_RS26095at 5392.235 kb on - strandat 5392.260 kb on + strand, within BWI76_RS26100

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,389,503 + BWI76_RS26080 0.55 -0.5
5,389,535 - BWI76_RS26080 0.57 +0.5
5,389,670 + BWI76_RS26080 0.68 -0.9
5,389,675 + BWI76_RS26080 0.68 -1.0
5,390,224 - -0.2
5,390,276 - -0.4
5,390,276 - +0.4
5,390,737 - BWI76_RS26085 0.51 +0.1
5,391,051 - BWI76_RS26085 0.80 -1.8
5,391,138 - BWI76_RS26085 0.88 -1.4
5,391,913 - BWI76_RS26095 0.19 -1.7
5,391,929 - BWI76_RS26095 0.26 +0.3
5,392,235 - +0.3
5,392,260 + BWI76_RS26100 0.12 +0.3

Or see this region's nucleotide sequence