Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24630

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24620 and BWI76_RS24625 are separated by 113 nucleotidesBWI76_RS24625 and BWI76_RS24630 overlap by 92 nucleotidesBWI76_RS24630 and BWI76_RS24635 are separated by 74 nucleotidesBWI76_RS24635 and BWI76_RS24640 overlap by 4 nucleotides BWI76_RS24620: BWI76_RS24620 - PadR family transcriptional regulator, at 5,132,558 to 5,133,112 _RS24620 BWI76_RS24625: BWI76_RS24625 - hypothetical protein, at 5,133,226 to 5,133,417 _RS24625 BWI76_RS24630: BWI76_RS24630 - putrescine aminotransferase, at 5,133,326 to 5,134,732 _RS24630 BWI76_RS24635: BWI76_RS24635 - autoinducer-2 (AI-2) modifying protein LsrG, at 5,134,807 to 5,135,103 _RS24635 BWI76_RS24640: BWI76_RS24640 - aldolase, at 5,135,100 to 5,135,987 _RS24640 Position (kb) 5133 5134 5135Strain fitness (log2 ratio) -1 0 1at 5132.588 kb on - strandat 5132.764 kb on - strandat 5132.940 kb on + strand, within BWI76_RS24620at 5132.960 kb on - strand, within BWI76_RS24620at 5132.960 kb on - strand, within BWI76_RS24620at 5132.960 kb on - strand, within BWI76_RS24620at 5132.977 kb on + strand, within BWI76_RS24620at 5133.122 kb on - strandat 5133.188 kb on - strandat 5133.282 kb on + strand, within BWI76_RS24625at 5133.309 kb on + strand, within BWI76_RS24625at 5133.317 kb on - strand, within BWI76_RS24625at 5133.338 kb on + strandat 5133.360 kb on + strandat 5133.367 kb on - strandat 5133.646 kb on + strand, within BWI76_RS24630at 5133.914 kb on + strand, within BWI76_RS24630at 5134.078 kb on - strand, within BWI76_RS24630at 5134.153 kb on + strand, within BWI76_RS24630at 5134.369 kb on - strand, within BWI76_RS24630at 5134.415 kb on - strand, within BWI76_RS24630at 5134.482 kb on + strand, within BWI76_RS24630at 5134.561 kb on - strand, within BWI76_RS24630at 5134.786 kb on + strandat 5134.804 kb on + strandat 5134.804 kb on + strandat 5134.812 kb on - strandat 5134.812 kb on - strandat 5134.875 kb on + strand, within BWI76_RS24635at 5134.909 kb on - strand, within BWI76_RS24635at 5135.021 kb on + strand, within BWI76_RS24635at 5135.041 kb on - strand, within BWI76_RS24635at 5135.136 kb on - strandat 5135.285 kb on - strand, within BWI76_RS24640at 5135.330 kb on - strand, within BWI76_RS24640at 5135.490 kb on - strand, within BWI76_RS24640at 5135.496 kb on - strand, within BWI76_RS24640at 5135.557 kb on + strand, within BWI76_RS24640at 5135.565 kb on - strand, within BWI76_RS24640at 5135.722 kb on - strand, within BWI76_RS24640

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,132,588 - +1.7
5,132,764 - +0.3
5,132,940 + BWI76_RS24620 0.69 +1.7
5,132,960 - BWI76_RS24620 0.72 -0.4
5,132,960 - BWI76_RS24620 0.72 -0.4
5,132,960 - BWI76_RS24620 0.72 +0.1
5,132,977 + BWI76_RS24620 0.75 -0.2
5,133,122 - -0.9
5,133,188 - -0.5
5,133,282 + BWI76_RS24625 0.29 +0.1
5,133,309 + BWI76_RS24625 0.43 +0.9
5,133,317 - BWI76_RS24625 0.47 +0.5
5,133,338 + +0.2
5,133,360 + -0.2
5,133,367 - +0.9
5,133,646 + BWI76_RS24630 0.23 +1.4
5,133,914 + BWI76_RS24630 0.42 +0.4
5,134,078 - BWI76_RS24630 0.53 -0.3
5,134,153 + BWI76_RS24630 0.59 +1.3
5,134,369 - BWI76_RS24630 0.74 +0.3
5,134,415 - BWI76_RS24630 0.77 -0.1
5,134,482 + BWI76_RS24630 0.82 +0.3
5,134,561 - BWI76_RS24630 0.88 +0.1
5,134,786 + +0.3
5,134,804 + +0.3
5,134,804 + -1.3
5,134,812 - +0.7
5,134,812 - +0.3
5,134,875 + BWI76_RS24635 0.23 +0.2
5,134,909 - BWI76_RS24635 0.34 -0.9
5,135,021 + BWI76_RS24635 0.72 -0.2
5,135,041 - BWI76_RS24635 0.79 -0.0
5,135,136 - +0.0
5,135,285 - BWI76_RS24640 0.21 +1.2
5,135,330 - BWI76_RS24640 0.26 -0.2
5,135,490 - BWI76_RS24640 0.44 +0.2
5,135,496 - BWI76_RS24640 0.45 -0.6
5,135,557 + BWI76_RS24640 0.51 +0.5
5,135,565 - BWI76_RS24640 0.52 -0.2
5,135,722 - BWI76_RS24640 0.70 +0.5

Or see this region's nucleotide sequence