Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22070 and BWI76_RS22075 are separated by 62 nucleotides BWI76_RS22075 and BWI76_RS22080 are separated by 241 nucleotides BWI76_RS22080 and BWI76_RS22085 overlap by 11 nucleotides
BWI76_RS22070: BWI76_RS22070 - proline/betaine ABC transporter permease ProW, at 4,607,625 to 4,608,689
_RS22070
BWI76_RS22075: BWI76_RS22075 - glycine betaine ABC transporter substrate-binding protein, at 4,608,752 to 4,609,747
_RS22075
BWI76_RS22080: BWI76_RS22080 - AzlC family protein, at 4,609,989 to 4,610,735
_RS22080
BWI76_RS22085: BWI76_RS22085 - L-valine transporter subunit YgaH, at 4,610,725 to 4,611,060
_RS22085
Position (kb)
4608
4609
4610 Strain fitness (log2 ratio)
-1
0
1 at 4607.904 kb on - strand, within BWI76_RS22070 at 4608.001 kb on - strand, within BWI76_RS22070 at 4608.183 kb on + strand, within BWI76_RS22070 at 4608.196 kb on - strand, within BWI76_RS22070 at 4608.220 kb on + strand, within BWI76_RS22070 at 4608.388 kb on - strand, within BWI76_RS22070 at 4608.655 kb on + strand at 4608.840 kb on + strand at 4608.843 kb on - strand at 4608.916 kb on + strand, within BWI76_RS22075 at 4608.968 kb on - strand, within BWI76_RS22075 at 4609.027 kb on + strand, within BWI76_RS22075 at 4609.129 kb on + strand, within BWI76_RS22075 at 4609.229 kb on + strand, within BWI76_RS22075 at 4609.287 kb on - strand, within BWI76_RS22075 at 4609.439 kb on + strand, within BWI76_RS22075 at 4609.458 kb on - strand, within BWI76_RS22075 at 4609.538 kb on + strand, within BWI76_RS22075 at 4609.551 kb on - strand, within BWI76_RS22075 at 4609.757 kb on + strand at 4609.819 kb on - strand at 4609.839 kb on - strand at 4609.922 kb on - strand at 4609.924 kb on + strand at 4610.281 kb on - strand, within BWI76_RS22080 at 4610.350 kb on + strand, within BWI76_RS22080 at 4610.360 kb on - strand, within BWI76_RS22080 at 4610.433 kb on + strand, within BWI76_RS22080 at 4610.433 kb on + strand, within BWI76_RS22080 at 4610.523 kb on + strand, within BWI76_RS22080 at 4610.538 kb on - strand, within BWI76_RS22080 at 4610.557 kb on - strand, within BWI76_RS22080 at 4610.663 kb on + strand at 4610.697 kb on + strand at 4610.699 kb on - strand at 4610.710 kb on - strand at 4610.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,607,904 - BWI76_RS22070 0.26 -0.0 4,608,001 - BWI76_RS22070 0.35 -0.3 4,608,183 + BWI76_RS22070 0.52 +0.5 4,608,196 - BWI76_RS22070 0.54 -0.3 4,608,220 + BWI76_RS22070 0.56 +0.6 4,608,388 - BWI76_RS22070 0.72 +0.2 4,608,655 + -0.1 4,608,840 + -1.7 4,608,843 - +0.2 4,608,916 + BWI76_RS22075 0.16 -0.6 4,608,968 - BWI76_RS22075 0.22 -0.6 4,609,027 + BWI76_RS22075 0.28 -0.6 4,609,129 + BWI76_RS22075 0.38 -0.1 4,609,229 + BWI76_RS22075 0.48 -0.7 4,609,287 - BWI76_RS22075 0.54 -0.1 4,609,439 + BWI76_RS22075 0.69 +0.2 4,609,458 - BWI76_RS22075 0.71 +0.2 4,609,538 + BWI76_RS22075 0.79 +0.9 4,609,551 - BWI76_RS22075 0.80 -0.1 4,609,757 + -0.6 4,609,819 - -0.6 4,609,839 - -0.8 4,609,922 - +0.3 4,609,924 + -0.0 4,610,281 - BWI76_RS22080 0.39 +0.4 4,610,350 + BWI76_RS22080 0.48 +0.0 4,610,360 - BWI76_RS22080 0.50 -0.4 4,610,433 + BWI76_RS22080 0.59 +0.6 4,610,433 + BWI76_RS22080 0.59 -0.5 4,610,523 + BWI76_RS22080 0.71 -0.2 4,610,538 - BWI76_RS22080 0.73 -0.8 4,610,557 - BWI76_RS22080 0.76 -0.9 4,610,663 + -0.1 4,610,697 + +0.1 4,610,699 - -0.2 4,610,710 - +0.2 4,610,737 + +0.5
Or see this region's nucleotide sequence