Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20025 and BWI76_RS20030 overlap by 14 nucleotides BWI76_RS20030 and BWI76_RS20035 are separated by 134 nucleotides BWI76_RS20035 and BWI76_RS20040 are separated by 15 nucleotides BWI76_RS20040 and BWI76_RS20045 are separated by 11 nucleotides
BWI76_RS20025: BWI76_RS20025 - HAMP domain-containing histidine kinase, at 4,195,340 to 4,196,755
_RS20025
BWI76_RS20030: BWI76_RS20030 - DNA-binding response regulator, at 4,196,742 to 4,197,416
_RS20030
BWI76_RS20035: BWI76_RS20035 - hypothetical protein, at 4,197,551 to 4,198,531
_RS20035
BWI76_RS20040: BWI76_RS20040 - tricarboxylic transport membrane protein, at 4,198,547 to 4,198,978
_RS20040
BWI76_RS20045: BWI76_RS20045 - hypothetical protein, at 4,198,990 to 4,200,510
_RS20045
Position (kb) 4197
4198
4199 Strain fitness (log2 ratio) -1
0
1 at 4196.762 kb on + strand at 4196.811 kb on + strand, within BWI76_RS20030 at 4196.846 kb on + strand, within BWI76_RS20030 at 4197.056 kb on - strand, within BWI76_RS20030 at 4197.156 kb on - strand, within BWI76_RS20030 at 4197.233 kb on + strand, within BWI76_RS20030 at 4197.527 kb on + strand at 4197.603 kb on - strand at 4197.610 kb on + strand at 4197.613 kb on - strand at 4197.705 kb on + strand, within BWI76_RS20035 at 4197.852 kb on + strand, within BWI76_RS20035 at 4197.852 kb on + strand, within BWI76_RS20035 at 4198.263 kb on + strand, within BWI76_RS20035 at 4198.393 kb on + strand, within BWI76_RS20035 at 4198.677 kb on + strand, within BWI76_RS20040 at 4198.697 kb on + strand, within BWI76_RS20040 at 4198.737 kb on - strand, within BWI76_RS20040 at 4198.909 kb on - strand, within BWI76_RS20040 at 4199.204 kb on - strand, within BWI76_RS20045 at 4199.237 kb on + strand, within BWI76_RS20045 at 4199.343 kb on - strand, within BWI76_RS20045
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,196,762 + -0.2 4,196,811 + BWI76_RS20030 0.10 +0.2 4,196,846 + BWI76_RS20030 0.15 +0.5 4,197,056 - BWI76_RS20030 0.47 -0.1 4,197,156 - BWI76_RS20030 0.61 +0.1 4,197,233 + BWI76_RS20030 0.73 +1.1 4,197,527 + +0.4 4,197,603 - -0.0 4,197,610 + +0.4 4,197,613 - +0.1 4,197,705 + BWI76_RS20035 0.16 -0.8 4,197,852 + BWI76_RS20035 0.31 +0.0 4,197,852 + BWI76_RS20035 0.31 +0.1 4,198,263 + BWI76_RS20035 0.73 +1.7 4,198,393 + BWI76_RS20035 0.86 +0.4 4,198,677 + BWI76_RS20040 0.30 +0.4 4,198,697 + BWI76_RS20040 0.35 +0.2 4,198,737 - BWI76_RS20040 0.44 +1.1 4,198,909 - BWI76_RS20040 0.84 +0.4 4,199,204 - BWI76_RS20045 0.14 +0.7 4,199,237 + BWI76_RS20045 0.16 +0.1 4,199,343 - BWI76_RS20045 0.23 -0.0
Or see this region's nucleotide sequence