Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18925

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS18920 and BWI76_RS18925 are separated by 39 nucleotidesBWI76_RS18925 and BWI76_RS18930 overlap by 4 nucleotides BWI76_RS18920: BWI76_RS18920 - ATP phosphoribosyltransferase, at 3,924,599 to 3,925,498 _RS18920 BWI76_RS18925: BWI76_RS18925 - histidinol dehydrogenase, at 3,925,538 to 3,926,842 _RS18925 BWI76_RS18930: BWI76_RS18930 - histidinol-phosphate transaminase, at 3,926,839 to 3,927,900 _RS18930 Position (kb) 3925 3926 3927Strain fitness (log2 ratio) -2 -1 0 1at 3924.568 kb on + strandat 3924.568 kb on + strandat 3924.578 kb on + strandat 3924.586 kb on - strandat 3924.586 kb on - strandat 3924.586 kb on - strandat 3924.698 kb on - strand, within BWI76_RS18920at 3924.720 kb on - strand, within BWI76_RS18920at 3924.867 kb on - strand, within BWI76_RS18920at 3925.011 kb on + strand, within BWI76_RS18920at 3925.425 kb on - strandat 3925.663 kb on + strandat 3925.795 kb on + strand, within BWI76_RS18925at 3925.961 kb on + strandat 3925.969 kb on - strand, within BWI76_RS18925at 3926.059 kb on + strand, within BWI76_RS18925at 3926.096 kb on + strand, within BWI76_RS18925at 3926.508 kb on + strand, within BWI76_RS18925at 3926.719 kb on - strandat 3926.802 kb on + strandat 3926.851 kb on + strandat 3926.960 kb on + strand, within BWI76_RS18930at 3927.342 kb on + strand, within BWI76_RS18930at 3927.645 kb on - strand, within BWI76_RS18930at 3927.841 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,924,568 + -0.0
3,924,568 + +0.2
3,924,578 + -0.2
3,924,586 - -0.3
3,924,586 - -0.4
3,924,586 - +0.2
3,924,698 - BWI76_RS18920 0.11 -0.0
3,924,720 - BWI76_RS18920 0.13 +0.1
3,924,867 - BWI76_RS18920 0.30 +0.0
3,925,011 + BWI76_RS18920 0.46 -1.2
3,925,425 - -0.5
3,925,663 + -0.0
3,925,795 + BWI76_RS18925 0.20 +0.2
3,925,961 + +0.7
3,925,969 - BWI76_RS18925 0.33 -0.1
3,926,059 + BWI76_RS18925 0.40 -0.3
3,926,096 + BWI76_RS18925 0.43 -1.9
3,926,508 + BWI76_RS18925 0.74 -0.4
3,926,719 - -0.7
3,926,802 + -0.1
3,926,851 + +0.0
3,926,960 + BWI76_RS18930 0.11 -0.2
3,927,342 + BWI76_RS18930 0.47 -0.1
3,927,645 - BWI76_RS18930 0.76 -0.1
3,927,841 + +0.3

Or see this region's nucleotide sequence