Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15085 and BWI76_RS15090 overlap by 11 nucleotides BWI76_RS15090 and BWI76_RS15095 are separated by 18 nucleotides BWI76_RS15095 and BWI76_RS15100 are separated by 29 nucleotides
BWI76_RS15085: BWI76_RS15085 - 3-deoxy-D-arabinose-heptulosonic-7-phosphate synthase, at 3,160,014 to 3,161,183
_RS15085
BWI76_RS15090: BWI76_RS15090 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 3,161,173 to 3,161,958
_RS15090
BWI76_RS15095: BWI76_RS15095 - isochorismatase, at 3,161,977 to 3,162,609
_RS15095
BWI76_RS15100: BWI76_RS15100 - phenazine biosynthesis protein PhzE, at 3,162,639 to 3,164,588
_RS15100
Position (kb)
3161
3162
3163 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3160.981 kb on + strand, within BWI76_RS15085 at 3161.145 kb on - strand at 3161.190 kb on + strand at 3161.200 kb on - strand at 3161.270 kb on - strand, within BWI76_RS15090 at 3161.275 kb on + strand, within BWI76_RS15090 at 3161.314 kb on - strand, within BWI76_RS15090 at 3161.622 kb on + strand, within BWI76_RS15090 at 3161.719 kb on - strand, within BWI76_RS15090 at 3161.876 kb on + strand, within BWI76_RS15090 at 3161.884 kb on - strand at 3161.975 kb on - strand at 3161.991 kb on + strand at 3162.061 kb on - strand, within BWI76_RS15095 at 3162.120 kb on - strand at 3162.120 kb on - strand, within BWI76_RS15095 at 3162.229 kb on - strand, within BWI76_RS15095 at 3162.229 kb on - strand, within BWI76_RS15095 at 3162.545 kb on - strand, within BWI76_RS15095 at 3162.652 kb on - strand at 3162.720 kb on - strand at 3162.766 kb on + strand at 3163.103 kb on - strand, within BWI76_RS15100 at 3163.149 kb on + strand, within BWI76_RS15100 at 3163.200 kb on - strand at 3163.230 kb on - strand, within BWI76_RS15100 at 3163.297 kb on + strand, within BWI76_RS15100 at 3163.451 kb on + strand, within BWI76_RS15100 at 3163.491 kb on + strand, within BWI76_RS15100 at 3163.513 kb on + strand, within BWI76_RS15100 at 3163.572 kb on - strand, within BWI76_RS15100
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,160,981 + BWI76_RS15085 0.83 +0.5 3,161,145 - -0.7 3,161,190 + -1.0 3,161,200 - +0.6 3,161,270 - BWI76_RS15090 0.12 -0.1 3,161,275 + BWI76_RS15090 0.13 +0.1 3,161,314 - BWI76_RS15090 0.18 +0.0 3,161,622 + BWI76_RS15090 0.57 -0.4 3,161,719 - BWI76_RS15090 0.69 +0.6 3,161,876 + BWI76_RS15090 0.89 -0.3 3,161,884 - +0.8 3,161,975 - -0.4 3,161,991 + +0.6 3,162,061 - BWI76_RS15095 0.13 +0.0 3,162,120 - +3.2 3,162,120 - BWI76_RS15095 0.23 +0.6 3,162,229 - BWI76_RS15095 0.40 +0.6 3,162,229 - BWI76_RS15095 0.40 +0.2 3,162,545 - BWI76_RS15095 0.90 +1.4 3,162,652 - -1.4 3,162,720 - -0.0 3,162,766 + -0.1 3,163,103 - BWI76_RS15100 0.24 -1.0 3,163,149 + BWI76_RS15100 0.26 -1.6 3,163,200 - +0.3 3,163,230 - BWI76_RS15100 0.30 -0.4 3,163,297 + BWI76_RS15100 0.34 -0.1 3,163,451 + BWI76_RS15100 0.42 +1.2 3,163,491 + BWI76_RS15100 0.44 -0.5 3,163,513 + BWI76_RS15100 0.45 -0.2 3,163,572 - BWI76_RS15100 0.48 -0.6
Or see this region's nucleotide sequence