Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13250 and BWI76_RS13255 are separated by 169 nucleotides BWI76_RS13255 and BWI76_RS13260 are separated by 22 nucleotides BWI76_RS13260 and BWI76_RS13265 are separated by 51 nucleotides BWI76_RS13265 and BWI76_RS13270 are separated by 173 nucleotides
BWI76_RS13250: BWI76_RS13250 - cytochrome b561, at 2,763,623 to 2,764,150
_RS13250
BWI76_RS13255: BWI76_RS13255 - hypothetical protein, at 2,764,320 to 2,764,595
_RS13255
BWI76_RS13260: BWI76_RS13260 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 2,764,618 to 2,765,736
_RS13260
BWI76_RS13265: BWI76_RS13265 - hypothetical protein, at 2,765,788 to 2,766,066
_RS13265
BWI76_RS13270: BWI76_RS13270 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 2,766,240 to 2,768,612
_RS13270
Position (kb)
2764
2765
2766 Strain fitness (log2 ratio)
-1
0
1
2 at 2763.838 kb on + strand, within BWI76_RS13250 at 2764.748 kb on + strand, within BWI76_RS13260 at 2764.756 kb on - strand, within BWI76_RS13260 at 2764.792 kb on + strand, within BWI76_RS13260 at 2765.157 kb on - strand, within BWI76_RS13260 at 2765.162 kb on - strand, within BWI76_RS13260 at 2765.249 kb on - strand, within BWI76_RS13260 at 2765.256 kb on - strand, within BWI76_RS13260 at 2765.340 kb on + strand, within BWI76_RS13260 at 2765.572 kb on + strand, within BWI76_RS13260 at 2765.654 kb on - strand at 2765.840 kb on - strand, within BWI76_RS13265 at 2765.883 kb on - strand, within BWI76_RS13265 at 2765.883 kb on - strand, within BWI76_RS13265 at 2765.998 kb on + strand, within BWI76_RS13265
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,763,838 + BWI76_RS13250 0.41 +0.4 2,764,748 + BWI76_RS13260 0.12 +1.1 2,764,756 - BWI76_RS13260 0.12 +0.1 2,764,792 + BWI76_RS13260 0.16 +1.1 2,765,157 - BWI76_RS13260 0.48 -0.1 2,765,162 - BWI76_RS13260 0.49 +2.0 2,765,249 - BWI76_RS13260 0.56 +0.3 2,765,256 - BWI76_RS13260 0.57 +0.1 2,765,340 + BWI76_RS13260 0.65 +0.7 2,765,572 + BWI76_RS13260 0.85 +0.4 2,765,654 - +0.2 2,765,840 - BWI76_RS13265 0.19 -0.9 2,765,883 - BWI76_RS13265 0.34 -0.5 2,765,883 - BWI76_RS13265 0.34 -0.9 2,765,998 + BWI76_RS13265 0.75 -0.1
Or see this region's nucleotide sequence