Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06460 and BWI76_RS06465 are separated by 153 nucleotides BWI76_RS06465 and BWI76_RS06470 are separated by 45 nucleotides BWI76_RS06470 and BWI76_RS06475 are separated by 295 nucleotides
BWI76_RS06460: BWI76_RS06460 - shikimate dehydrogenase, at 1,358,130 to 1,358,951
_RS06460
BWI76_RS06465: BWI76_RS06465 - IclR family transcriptional regulator, at 1,359,105 to 1,359,863
_RS06465
BWI76_RS06470: BWI76_RS06470 - hypothetical protein, at 1,359,909 to 1,360,241
_RS06470
BWI76_RS06475: BWI76_RS06475 - protoheme IX farnesyltransferase, at 1,360,537 to 1,361,424
_RS06475
Position (kb)
1359
1360
1361 Strain fitness (log2 ratio)
-1
0
1 at 1359.362 kb on - strand, within BWI76_RS06465 at 1359.378 kb on - strand, within BWI76_RS06465 at 1359.499 kb on + strand, within BWI76_RS06465 at 1360.033 kb on - strand, within BWI76_RS06470 at 1360.147 kb on + strand, within BWI76_RS06470 at 1360.190 kb on + strand, within BWI76_RS06470 at 1360.277 kb on + strand at 1360.277 kb on + strand at 1360.277 kb on + strand at 1360.287 kb on - strand at 1360.287 kb on - strand at 1360.305 kb on - strand at 1360.305 kb on - strand at 1360.313 kb on - strand at 1360.546 kb on - strand at 1360.575 kb on + strand at 1360.842 kb on + strand, within BWI76_RS06475 at 1361.081 kb on - strand, within BWI76_RS06475
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,359,362 - BWI76_RS06465 0.34 +1.4 1,359,378 - BWI76_RS06465 0.36 -0.7 1,359,499 + BWI76_RS06465 0.52 -0.1 1,360,033 - BWI76_RS06470 0.37 +0.2 1,360,147 + BWI76_RS06470 0.71 +0.9 1,360,190 + BWI76_RS06470 0.84 -0.9 1,360,277 + -0.1 1,360,277 + -0.2 1,360,277 + -0.5 1,360,287 - -0.7 1,360,287 - -0.3 1,360,305 - -0.1 1,360,305 - -0.3 1,360,313 - -0.1 1,360,546 - -0.6 1,360,575 + -0.2 1,360,842 + BWI76_RS06475 0.34 -1.1 1,361,081 - BWI76_RS06475 0.61 -0.2
Or see this region's nucleotide sequence