Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04135 and BWI76_RS04140 are separated by 52 nucleotides BWI76_RS04140 and BWI76_RS04145 are separated by 94 nucleotides BWI76_RS04145 and BWI76_RS04150 are separated by 58 nucleotides
BWI76_RS04135: BWI76_RS04135 - thymidine phosphorylase, at 850,425 to 851,747
_RS04135
BWI76_RS04140: BWI76_RS04140 - phosphopentomutase, at 851,800 to 853,023
_RS04140
BWI76_RS04145: BWI76_RS04145 - purine-nucleoside phosphorylase, at 853,118 to 853,840
_RS04145
BWI76_RS04150: BWI76_RS04150 - lipoate--protein ligase A, at 853,899 to 854,915
_RS04150
Position (kb) 851
852
853
854 Strain fitness (log2 ratio) -2
-1
0
1 at 850.836 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.077 kb on - strand, within BWI76_RS04135 at 851.136 kb on + strand at 851.331 kb on + strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.661 kb on - strand at 851.663 kb on + strand at 851.752 kb on + strand at 851.755 kb on - strand at 851.760 kb on - strand at 851.896 kb on - strand at 851.972 kb on + strand, within BWI76_RS04140 at 851.980 kb on - strand, within BWI76_RS04140 at 851.990 kb on - strand, within BWI76_RS04140 at 852.095 kb on + strand, within BWI76_RS04140 at 852.195 kb on + strand, within BWI76_RS04140 at 852.378 kb on + strand, within BWI76_RS04140 at 852.585 kb on + strand, within BWI76_RS04140 at 852.856 kb on + strand, within BWI76_RS04140 at 852.866 kb on + strand, within BWI76_RS04140 at 852.948 kb on - strand at 853.171 kb on + strand at 853.670 kb on + strand, within BWI76_RS04145 at 853.696 kb on - strand, within BWI76_RS04145 at 853.751 kb on + strand, within BWI76_RS04145 at 853.789 kb on - strand at 853.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 850,836 + BWI76_RS04135 0.31 +0.2 851,062 + BWI76_RS04135 0.48 -1.1 851,062 + BWI76_RS04135 0.48 -0.2 851,077 - BWI76_RS04135 0.49 +0.3 851,136 + +1.7 851,331 + BWI76_RS04135 0.68 -0.4 851,339 - BWI76_RS04135 0.69 -0.2 851,339 - BWI76_RS04135 0.69 -0.1 851,661 - +0.2 851,663 + +0.1 851,752 + -1.7 851,755 - +0.5 851,760 - +0.2 851,896 - +0.1 851,972 + BWI76_RS04140 0.14 -0.6 851,980 - BWI76_RS04140 0.15 -0.3 851,990 - BWI76_RS04140 0.16 -1.1 852,095 + BWI76_RS04140 0.24 +0.4 852,195 + BWI76_RS04140 0.32 -2.4 852,378 + BWI76_RS04140 0.47 -0.5 852,585 + BWI76_RS04140 0.64 -0.1 852,856 + BWI76_RS04140 0.86 -0.2 852,866 + BWI76_RS04140 0.87 -0.2 852,948 - -0.4 853,171 + +0.0 853,670 + BWI76_RS04145 0.76 -0.3 853,696 - BWI76_RS04145 0.80 +1.1 853,751 + BWI76_RS04145 0.88 +0.3 853,789 - +0.3 853,815 + -0.3
Or see this region's nucleotide sequence