Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01930 and BWI76_RS01935 are separated by 141 nucleotides BWI76_RS01935 and BWI76_RS01940 are separated by 2 nucleotides BWI76_RS01940 and BWI76_RS01945 are separated by 191 nucleotides BWI76_RS01945 and BWI76_RS01950 are separated by 132 nucleotides
BWI76_RS01930: BWI76_RS01930 - acid phosphatase/phosphotransferase, at 393,687 to 394,400
_RS01930
BWI76_RS01935: BWI76_RS01935 - thiamin phosphate synthase, at 394,542 to 394,958
_RS01935
BWI76_RS01940: BWI76_RS01940 - hypothetical protein, at 394,961 to 395,314
_RS01940
BWI76_RS01945: BWI76_RS01945 - hypothetical protein, at 395,506 to 395,753
_RS01945
BWI76_RS01950: BWI76_RS01950 - excinuclease ABC subunit A, at 395,886 to 398,711
_RS01950
Position (kb) 394
395 Strain fitness (log2 ratio) -2
-1
0
1 at 393.583 kb on - strand at 393.699 kb on + strand at 393.706 kb on + strand at 393.823 kb on - strand, within BWI76_RS01930 at 393.823 kb on - strand, within BWI76_RS01930 at 393.838 kb on - strand, within BWI76_RS01930 at 394.227 kb on + strand, within BWI76_RS01930 at 394.285 kb on + strand, within BWI76_RS01930 at 394.369 kb on + strand at 394.377 kb on - strand at 394.473 kb on + strand at 394.488 kb on - strand at 394.560 kb on - strand at 394.637 kb on + strand, within BWI76_RS01935 at 394.858 kb on - strand, within BWI76_RS01935 at 394.862 kb on - strand, within BWI76_RS01935 at 394.934 kb on - strand at 394.994 kb on + strand at 395.004 kb on + strand, within BWI76_RS01940 at 395.009 kb on + strand, within BWI76_RS01940 at 395.044 kb on + strand, within BWI76_RS01940 at 395.321 kb on + strand at 395.347 kb on - strand at 395.442 kb on + strand at 395.529 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 393,583 - +0.8 393,699 + +0.4 393,706 + -1.1 393,823 - BWI76_RS01930 0.19 -0.5 393,823 - BWI76_RS01930 0.19 +0.5 393,838 - BWI76_RS01930 0.21 -0.3 394,227 + BWI76_RS01930 0.76 +0.5 394,285 + BWI76_RS01930 0.84 -0.8 394,369 + +0.2 394,377 - +0.1 394,473 + -1.0 394,488 - -0.6 394,560 - -0.4 394,637 + BWI76_RS01935 0.23 -1.0 394,858 - BWI76_RS01935 0.76 -1.9 394,862 - BWI76_RS01935 0.77 -0.7 394,934 - -0.6 394,994 + -0.3 395,004 + BWI76_RS01940 0.12 +0.8 395,009 + BWI76_RS01940 0.14 +0.6 395,044 + BWI76_RS01940 0.23 -1.0 395,321 + -0.6 395,347 - +0.4 395,442 + -0.3 395,529 - +0.1
Or see this region's nucleotide sequence