Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.649.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.647.1 and Xcc-8004.649.1 are separated by 191 nucleotidesXcc-8004.649.1 and Xcc-8004.650.1 overlap by 23 nucleotidesXcc-8004.650.1 and Xcc-8004.651.1 overlap by 1 nucleotides Xcc-8004.647.1: Xcc-8004.647.1 - transmembrane protein, at 590,661 to 591,554 Xcc-8004.647.1 Xcc-8004.649.1: Xcc-8004.649.1 - hypothetical protein, at 591,746 to 592,000 Xcc-8004.649.1 Xcc-8004.650.1: Xcc-8004.650.1 - FIG01211385: hypothetical protein, at 591,978 to 592,388 Xcc-8004.650.1 Xcc-8004.651.1: Xcc-8004.651.1 - Transmembrane protein, at 592,388 to 592,732 Xcc-8004.651.1 Position (kb) 591 592 593Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 590.781 kb on + strand, within Xcc-8004.647.1at 590.781 kb on + strand, within Xcc-8004.647.1at 590.781 kb on + strand, within Xcc-8004.647.1at 590.781 kb on + strand, within Xcc-8004.647.1at 590.781 kb on + strand, within Xcc-8004.647.1at 590.782 kb on - strand, within Xcc-8004.647.1at 590.782 kb on - strand, within Xcc-8004.647.1at 590.814 kb on + strand, within Xcc-8004.647.1at 591.293 kb on + strand, within Xcc-8004.647.1at 591.293 kb on + strand, within Xcc-8004.647.1at 591.293 kb on + strand, within Xcc-8004.647.1at 591.294 kb on - strand, within Xcc-8004.647.1at 591.420 kb on + strand, within Xcc-8004.647.1at 591.421 kb on - strand, within Xcc-8004.647.1at 591.514 kb on + strandat 591.514 kb on + strandat 591.514 kb on + strandat 591.515 kb on - strandat 591.515 kb on - strandat 591.515 kb on - strandat 591.517 kb on + strandat 591.517 kb on + strandat 591.517 kb on + strandat 591.518 kb on - strandat 591.518 kb on - strandat 591.607 kb on + strandat 591.607 kb on + strandat 591.607 kb on + strandat 591.608 kb on - strandat 591.608 kb on - strandat 591.616 kb on + strandat 591.617 kb on - strandat 591.617 kb on - strandat 591.654 kb on + strandat 591.654 kb on + strandat 591.674 kb on + strandat 591.675 kb on - strandat 591.675 kb on - strandat 591.677 kb on + strandat 591.677 kb on + strandat 591.790 kb on - strand, within Xcc-8004.649.1at 591.866 kb on - strand, within Xcc-8004.649.1at 591.979 kb on + strandat 591.998 kb on + strandat 591.999 kb on - strandat 592.033 kb on + strand, within Xcc-8004.650.1at 592.034 kb on - strand, within Xcc-8004.650.1at 592.034 kb on - strand, within Xcc-8004.650.1at 592.034 kb on - strand, within Xcc-8004.650.1at 592.051 kb on - strand, within Xcc-8004.650.1at 592.051 kb on - strand, within Xcc-8004.650.1at 592.210 kb on + strand, within Xcc-8004.650.1at 592.210 kb on + strand, within Xcc-8004.650.1at 592.211 kb on - strand, within Xcc-8004.650.1at 592.211 kb on - strand, within Xcc-8004.650.1at 592.211 kb on - strand, within Xcc-8004.650.1at 592.211 kb on - strand, within Xcc-8004.650.1at 592.211 kb on - strand, within Xcc-8004.650.1at 592.243 kb on + strand, within Xcc-8004.650.1at 592.243 kb on + strand, within Xcc-8004.650.1at 592.244 kb on - strand, within Xcc-8004.650.1at 592.244 kb on - strand, within Xcc-8004.650.1at 592.313 kb on - strand, within Xcc-8004.650.1at 592.313 kb on - strand, within Xcc-8004.650.1at 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.425 kb on + strand, within Xcc-8004.651.1at 592.425 kb on + strand, within Xcc-8004.651.1at 592.425 kb on + strand, within Xcc-8004.651.1at 592.425 kb on + strand, within Xcc-8004.651.1at 592.425 kb on + strand, within Xcc-8004.651.1at 592.425 kb on + strand, within Xcc-8004.651.1at 592.426 kb on - strand, within Xcc-8004.651.1at 592.426 kb on - strand, within Xcc-8004.651.1at 592.426 kb on - strand, within Xcc-8004.651.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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590,781 + Xcc-8004.647.1 0.13 -3.0
590,781 + Xcc-8004.647.1 0.13 +1.2
590,781 + Xcc-8004.647.1 0.13 -4.1
590,781 + Xcc-8004.647.1 0.13 -0.6
590,781 + Xcc-8004.647.1 0.13 -0.8
590,782 - Xcc-8004.647.1 0.14 -2.4
590,782 - Xcc-8004.647.1 0.14 +1.0
590,814 + Xcc-8004.647.1 0.17 -1.9
591,293 + Xcc-8004.647.1 0.71 +0.7
591,293 + Xcc-8004.647.1 0.71 -0.7
591,293 + Xcc-8004.647.1 0.71 +0.3
591,294 - Xcc-8004.647.1 0.71 -0.7
591,420 + Xcc-8004.647.1 0.85 +0.6
591,421 - Xcc-8004.647.1 0.85 -0.9
591,514 + +1.3
591,514 + +0.1
591,514 + -0.9
591,515 - +1.1
591,515 - +1.2
591,515 - +0.6
591,517 + +0.4
591,517 + -0.5
591,517 + +1.3
591,518 - -0.3
591,518 - +1.3
591,607 + -1.7
591,607 + +0.9
591,607 + +1.3
591,608 - +1.4
591,608 - -0.3
591,616 + +0.8
591,617 - -0.3
591,617 - +0.4
591,654 + -0.2
591,654 + -1.9
591,674 + +0.3
591,675 - -0.2
591,675 - +0.9
591,677 + -1.0
591,677 + +0.1
591,790 - Xcc-8004.649.1 0.17 -0.6
591,866 - Xcc-8004.649.1 0.47 -0.9
591,979 + -1.6
591,998 + -0.7
591,999 - +0.8
592,033 + Xcc-8004.650.1 0.13 +0.6
592,034 - Xcc-8004.650.1 0.14 -1.4
592,034 - Xcc-8004.650.1 0.14 +0.2
592,034 - Xcc-8004.650.1 0.14 -0.9
592,051 - Xcc-8004.650.1 0.18 -2.5
592,051 - Xcc-8004.650.1 0.18 +1.4
592,210 + Xcc-8004.650.1 0.56 -0.5
592,210 + Xcc-8004.650.1 0.56 +1.1
592,211 - Xcc-8004.650.1 0.57 -2.3
592,211 - Xcc-8004.650.1 0.57 +0.5
592,211 - Xcc-8004.650.1 0.57 -0.5
592,211 - Xcc-8004.650.1 0.57 -1.1
592,211 - Xcc-8004.650.1 0.57 +0.8
592,243 + Xcc-8004.650.1 0.64 -0.5
592,243 + Xcc-8004.650.1 0.64 -0.5
592,244 - Xcc-8004.650.1 0.65 +0.1
592,244 - Xcc-8004.650.1 0.65 -0.3
592,313 - Xcc-8004.650.1 0.82 +0.3
592,313 - Xcc-8004.650.1 0.82 -2.3
592,416 + +0.9
592,416 + -3.5
592,416 + +1.6
592,416 + +0.1
592,416 + +0.6
592,416 + -0.1
592,416 + -0.2
592,416 + -0.4
592,417 - +1.6
592,417 - +1.6
592,417 - -0.4
592,417 - +0.1
592,417 - +0.0
592,417 - +0.3
592,417 - +0.4
592,417 - -0.4
592,417 - +0.1
592,417 - +0.8
592,425 + Xcc-8004.651.1 0.11 +0.4
592,425 + Xcc-8004.651.1 0.11 +0.4
592,425 + Xcc-8004.651.1 0.11 +1.8
592,425 + Xcc-8004.651.1 0.11 +0.7
592,425 + Xcc-8004.651.1 0.11 +0.6
592,425 + Xcc-8004.651.1 0.11 -1.1
592,426 - Xcc-8004.651.1 0.11 -0.0
592,426 - Xcc-8004.651.1 0.11 -3.6
592,426 - Xcc-8004.651.1 0.11 +0.1

Or see this region's nucleotide sequence