Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.56.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.55.1 and Xcc-8004.56.1 are separated by 37 nucleotidesXcc-8004.56.1 and Xcc-8004.57.1 are separated by 260 nucleotidesXcc-8004.57.1 and Xcc-8004.58.1 are separated by 3 nucleotides Xcc-8004.55.1: Xcc-8004.55.1 - transcriptional regulator, at 53,054 to 53,944 Xcc-8004.55.1 Xcc-8004.56.1: Xcc-8004.56.1 - hypothetical protein, at 53,982 to 54,551 Xcc-8004.56.1 Xcc-8004.57.1: Xcc-8004.57.1 - Transcriptional repressor, BlaI/MecI family, at 54,812 to 55,198 Xcc-8004.57.1 Xcc-8004.58.1: Xcc-8004.58.1 - Regulatory sensor-transducer, BlaR1/MecR1 family, at 55,202 to 56,914 Xcc-8004.58.1 Position (kb) 53 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 52.994 kb on + strandat 52.994 kb on + strandat 52.995 kb on - strandat 52.995 kb on - strandat 52.995 kb on - strandat 53.210 kb on + strand, within Xcc-8004.55.1at 53.522 kb on + strand, within Xcc-8004.55.1at 53.573 kb on + strand, within Xcc-8004.55.1at 53.573 kb on + strand, within Xcc-8004.55.1at 53.573 kb on + strand, within Xcc-8004.55.1at 53.573 kb on + strand, within Xcc-8004.55.1at 53.574 kb on - strand, within Xcc-8004.55.1at 53.574 kb on - strand, within Xcc-8004.55.1at 53.574 kb on - strand, within Xcc-8004.55.1at 53.574 kb on - strand, within Xcc-8004.55.1at 53.574 kb on - strand, within Xcc-8004.55.1at 53.574 kb on - strand, within Xcc-8004.55.1at 53.574 kb on - strand, within Xcc-8004.55.1at 53.574 kb on - strand, within Xcc-8004.55.1at 53.574 kb on - strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.577 kb on + strand, within Xcc-8004.55.1at 53.578 kb on - strand, within Xcc-8004.55.1at 53.578 kb on - strand, within Xcc-8004.55.1at 53.578 kb on - strand, within Xcc-8004.55.1at 53.578 kb on - strand, within Xcc-8004.55.1at 53.578 kb on - strand, within Xcc-8004.55.1at 53.578 kb on - strand, within Xcc-8004.55.1at 53.636 kb on + strand, within Xcc-8004.55.1at 53.637 kb on - strand, within Xcc-8004.55.1at 53.637 kb on - strand, within Xcc-8004.55.1at 53.637 kb on - strand, within Xcc-8004.55.1at 53.858 kb on + strandat 53.858 kb on + strandat 53.858 kb on + strandat 53.859 kb on - strandat 53.859 kb on - strandat 53.943 kb on - strandat 54.021 kb on - strandat 54.021 kb on - strandat 54.021 kb on - strandat 54.132 kb on + strand, within Xcc-8004.56.1at 54.133 kb on - strand, within Xcc-8004.56.1at 54.133 kb on - strand, within Xcc-8004.56.1at 54.461 kb on + strand, within Xcc-8004.56.1at 54.462 kb on - strand, within Xcc-8004.56.1at 54.462 kb on - strand, within Xcc-8004.56.1at 54.462 kb on - strand, within Xcc-8004.56.1at 54.462 kb on - strand, within Xcc-8004.56.1at 54.468 kb on + strand, within Xcc-8004.56.1at 54.468 kb on + strand, within Xcc-8004.56.1at 54.469 kb on - strand, within Xcc-8004.56.1at 54.469 kb on - strand, within Xcc-8004.56.1at 54.469 kb on - strand, within Xcc-8004.56.1at 54.574 kb on - strandat 54.574 kb on - strandat 54.591 kb on + strandat 54.592 kb on - strandat 54.614 kb on + strandat 54.614 kb on + strandat 54.615 kb on - strandat 54.615 kb on - strandat 54.615 kb on - strandat 54.615 kb on - strandat 54.615 kb on - strandat 54.622 kb on + strandat 54.622 kb on + strandat 54.622 kb on + strandat 54.622 kb on + strandat 54.623 kb on - strandat 54.623 kb on - strandat 54.623 kb on - strandat 54.753 kb on + strandat 54.754 kb on - strandat 54.760 kb on + strandat 54.796 kb on - strandat 55.004 kb on + strand, within Xcc-8004.57.1at 55.004 kb on + strand, within Xcc-8004.57.1at 55.004 kb on + strand, within Xcc-8004.57.1at 55.004 kb on + strand, within Xcc-8004.57.1at 55.005 kb on - strand, within Xcc-8004.57.1at 55.005 kb on - strand, within Xcc-8004.57.1at 55.010 kb on + strand, within Xcc-8004.57.1at 55.010 kb on + strand, within Xcc-8004.57.1at 55.011 kb on - strand, within Xcc-8004.57.1at 55.228 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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52,994 + -1.4
52,994 + -0.8
52,995 - -0.8
52,995 - +0.7
52,995 - -1.2
53,210 + Xcc-8004.55.1 0.18 -1.2
53,522 + Xcc-8004.55.1 0.53 -0.6
53,573 + Xcc-8004.55.1 0.58 -0.7
53,573 + Xcc-8004.55.1 0.58 -0.2
53,573 + Xcc-8004.55.1 0.58 -0.2
53,573 + Xcc-8004.55.1 0.58 +1.1
53,574 - Xcc-8004.55.1 0.58 -0.5
53,574 - Xcc-8004.55.1 0.58 +0.8
53,574 - Xcc-8004.55.1 0.58 +0.2
53,574 - Xcc-8004.55.1 0.58 -0.1
53,574 - Xcc-8004.55.1 0.58 +2.5
53,574 - Xcc-8004.55.1 0.58 -3.2
53,574 - Xcc-8004.55.1 0.58 +0.0
53,574 - Xcc-8004.55.1 0.58 -0.8
53,574 - Xcc-8004.55.1 0.58 +0.8
53,577 + Xcc-8004.55.1 0.59 -0.0
53,577 + Xcc-8004.55.1 0.59 +0.7
53,577 + Xcc-8004.55.1 0.59 +1.1
53,577 + Xcc-8004.55.1 0.59 +0.9
53,577 + Xcc-8004.55.1 0.59 +0.6
53,577 + Xcc-8004.55.1 0.59 +0.5
53,577 + Xcc-8004.55.1 0.59 +0.1
53,577 + Xcc-8004.55.1 0.59 +0.3
53,577 + Xcc-8004.55.1 0.59 +0.5
53,577 + Xcc-8004.55.1 0.59 +0.1
53,577 + Xcc-8004.55.1 0.59 +1.0
53,577 + Xcc-8004.55.1 0.59 -0.4
53,577 + Xcc-8004.55.1 0.59 -0.5
53,577 + Xcc-8004.55.1 0.59 +0.1
53,577 + Xcc-8004.55.1 0.59 +2.1
53,577 + Xcc-8004.55.1 0.59 +0.2
53,578 - Xcc-8004.55.1 0.59 -0.6
53,578 - Xcc-8004.55.1 0.59 -1.8
53,578 - Xcc-8004.55.1 0.59 +1.2
53,578 - Xcc-8004.55.1 0.59 +0.1
53,578 - Xcc-8004.55.1 0.59 -1.8
53,578 - Xcc-8004.55.1 0.59 -0.8
53,636 + Xcc-8004.55.1 0.65 +1.7
53,637 - Xcc-8004.55.1 0.65 +3.5
53,637 - Xcc-8004.55.1 0.65 -1.1
53,637 - Xcc-8004.55.1 0.65 +0.1
53,858 + -0.9
53,858 + -1.5
53,858 + +0.8
53,859 - +0.7
53,859 - +1.8
53,943 - -1.5
54,021 - +1.3
54,021 - -0.4
54,021 - +1.8
54,132 + Xcc-8004.56.1 0.26 -2.1
54,133 - Xcc-8004.56.1 0.26 -2.0
54,133 - Xcc-8004.56.1 0.26 -1.1
54,461 + Xcc-8004.56.1 0.84 +0.3
54,462 - Xcc-8004.56.1 0.84 -2.0
54,462 - Xcc-8004.56.1 0.84 +0.3
54,462 - Xcc-8004.56.1 0.84 -0.2
54,462 - Xcc-8004.56.1 0.84 -1.4
54,468 + Xcc-8004.56.1 0.85 +0.1
54,468 + Xcc-8004.56.1 0.85 -1.1
54,469 - Xcc-8004.56.1 0.85 -2.0
54,469 - Xcc-8004.56.1 0.85 -1.7
54,469 - Xcc-8004.56.1 0.85 +0.3
54,574 - -0.6
54,574 - -0.1
54,591 + +1.6
54,592 - -3.0
54,614 + -1.6
54,614 + -0.1
54,615 - -1.5
54,615 - -1.5
54,615 - -0.1
54,615 - -0.9
54,615 - -0.5
54,622 + +0.7
54,622 + -0.4
54,622 + +0.6
54,622 + -2.7
54,623 - +2.0
54,623 - -1.4
54,623 - +0.6
54,753 + +0.1
54,754 - +1.3
54,760 + +0.1
54,796 - +0.6
55,004 + Xcc-8004.57.1 0.50 -2.4
55,004 + Xcc-8004.57.1 0.50 -1.3
55,004 + Xcc-8004.57.1 0.50 -4.2
55,004 + Xcc-8004.57.1 0.50 -0.0
55,005 - Xcc-8004.57.1 0.50 +0.8
55,005 - Xcc-8004.57.1 0.50 -0.4
55,010 + Xcc-8004.57.1 0.51 -0.9
55,010 + Xcc-8004.57.1 0.51 +1.5
55,011 - Xcc-8004.57.1 0.51 -2.0
55,228 - -0.6

Or see this region's nucleotide sequence