Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.529.1 and Xcc-8004.530.1 overlap by 2 nucleotides Xcc-8004.530.1 and Xcc-8004.532.1 are separated by 548 nucleotides
Xcc-8004.529.1: Xcc-8004.529.1 - Phosphoglycerol transferase I (EC 2.7.8.20), at 484,652 to 486,760
Xcc-8004.529.1
Xcc-8004.530.1: Xcc-8004.530.1 - hypothetical protein, at 486,759 to 487,046
Xcc-8004.530.1
Xcc-8004.532.1: Xcc-8004.532.1 - ABC1 family protein, at 487,595 to 489,319
Xcc-8004.532.1
Position (kb) 486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 485.913 kb on + strand, within Xcc-8004.529.1 at 485.913 kb on + strand, within Xcc-8004.529.1 at 485.913 kb on + strand, within Xcc-8004.529.1 at 485.914 kb on - strand, within Xcc-8004.529.1 at 485.914 kb on - strand, within Xcc-8004.529.1 at 485.997 kb on + strand, within Xcc-8004.529.1 at 486.027 kb on + strand, within Xcc-8004.529.1 at 486.249 kb on + strand, within Xcc-8004.529.1 at 486.273 kb on + strand, within Xcc-8004.529.1 at 486.591 kb on + strand at 486.591 kb on + strand at 486.592 kb on - strand at 486.858 kb on + strand, within Xcc-8004.530.1 at 486.858 kb on + strand, within Xcc-8004.530.1 at 486.859 kb on - strand, within Xcc-8004.530.1 at 486.859 kb on - strand, within Xcc-8004.530.1 at 486.904 kb on + strand, within Xcc-8004.530.1 at 486.904 kb on + strand, within Xcc-8004.530.1 at 486.904 kb on + strand, within Xcc-8004.530.1 at 486.905 kb on - strand, within Xcc-8004.530.1 at 486.905 kb on - strand, within Xcc-8004.530.1 at 486.905 kb on - strand, within Xcc-8004.530.1 at 486.905 kb on - strand, within Xcc-8004.530.1 at 486.905 kb on - strand, within Xcc-8004.530.1 at 487.130 kb on + strand at 487.146 kb on + strand at 487.265 kb on + strand at 487.266 kb on - strand at 487.437 kb on + strand at 487.437 kb on + strand at 487.532 kb on + strand at 487.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 485,913 + Xcc-8004.529.1 0.60 -1.9 485,913 + Xcc-8004.529.1 0.60 -0.4 485,913 + Xcc-8004.529.1 0.60 -0.3 485,914 - Xcc-8004.529.1 0.60 +1.2 485,914 - Xcc-8004.529.1 0.60 -1.7 485,997 + Xcc-8004.529.1 0.64 +0.0 486,027 + Xcc-8004.529.1 0.65 +0.1 486,249 + Xcc-8004.529.1 0.76 -2.6 486,273 + Xcc-8004.529.1 0.77 +1.1 486,591 + +0.9 486,591 + +0.0 486,592 - -3.4 486,858 + Xcc-8004.530.1 0.34 -0.5 486,858 + Xcc-8004.530.1 0.34 -0.7 486,859 - Xcc-8004.530.1 0.35 -0.9 486,859 - Xcc-8004.530.1 0.35 +0.8 486,904 + Xcc-8004.530.1 0.50 +0.4 486,904 + Xcc-8004.530.1 0.50 -1.4 486,904 + Xcc-8004.530.1 0.50 -2.0 486,905 - Xcc-8004.530.1 0.51 -3.2 486,905 - Xcc-8004.530.1 0.51 -1.2 486,905 - Xcc-8004.530.1 0.51 +1.9 486,905 - Xcc-8004.530.1 0.51 -1.4 486,905 - Xcc-8004.530.1 0.51 -1.0 487,130 + +1.6 487,146 + -0.9 487,265 + +0.1 487,266 - +1.5 487,437 + +3.1 487,437 + +2.5 487,532 + +1.5 487,533 - -3.0
Or see this region's nucleotide sequence