Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5297.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5295.1 and Xcc-8004.5296.1 are separated by 185 nucleotidesXcc-8004.5296.1 and Xcc-8004.5297.1 overlap by 4 nucleotidesXcc-8004.5297.1 and Xcc-8004.5298.1 are separated by 171 nucleotides Xcc-8004.5295.1: Xcc-8004.5295.1 - UPF0225 protein YchJ, at 5,034,382 to 5,035,059 Xcc-8004.5295.1 Xcc-8004.5296.1: Xcc-8004.5296.1 - hypothetical protein, at 5,035,245 to 5,035,346 Xcc-8004.5296.1 Xcc-8004.5297.1: Xcc-8004.5297.1 - Thioredoxin reductase (EC 1.8.1.9), at 5,035,343 to 5,035,639 Xcc-8004.5297.1 Xcc-8004.5298.1: Xcc-8004.5298.1 - FIG011065: hypothetical protein, at 5,035,811 to 5,036,599 Xcc-8004.5298.1 Position (kb) 5035 5036Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5034.372 kb on + strandat 5034.383 kb on + strandat 5034.398 kb on + strandat 5034.398 kb on + strandat 5034.398 kb on + strandat 5034.398 kb on + strandat 5034.398 kb on + strandat 5034.398 kb on + strandat 5034.399 kb on - strandat 5034.399 kb on - strandat 5034.399 kb on - strandat 5034.399 kb on - strandat 5034.399 kb on - strandat 5034.399 kb on - strandat 5034.401 kb on + strandat 5034.401 kb on + strandat 5034.401 kb on + strandat 5034.401 kb on + strandat 5034.401 kb on + strandat 5034.401 kb on + strandat 5034.401 kb on + strandat 5034.401 kb on + strandat 5034.401 kb on + strandat 5034.402 kb on - strandat 5034.402 kb on - strandat 5034.402 kb on - strandat 5034.402 kb on - strandat 5034.402 kb on - strandat 5034.402 kb on - strandat 5034.402 kb on - strandat 5034.402 kb on - strandat 5034.618 kb on - strand, within Xcc-8004.5295.1at 5034.618 kb on - strand, within Xcc-8004.5295.1at 5034.618 kb on - strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.638 kb on + strand, within Xcc-8004.5295.1at 5034.639 kb on - strand, within Xcc-8004.5295.1at 5034.639 kb on - strand, within Xcc-8004.5295.1at 5034.639 kb on - strand, within Xcc-8004.5295.1at 5034.639 kb on - strand, within Xcc-8004.5295.1at 5034.639 kb on - strand, within Xcc-8004.5295.1at 5034.639 kb on - strand, within Xcc-8004.5295.1at 5034.639 kb on - strand, within Xcc-8004.5295.1at 5034.639 kb on - strand, within Xcc-8004.5295.1at 5034.639 kb on - strand, within Xcc-8004.5295.1at 5034.639 kb on - strand, within Xcc-8004.5295.1at 5034.648 kb on - strand, within Xcc-8004.5295.1at 5034.648 kb on - strand, within Xcc-8004.5295.1at 5034.698 kb on + strand, within Xcc-8004.5295.1at 5034.698 kb on + strand, within Xcc-8004.5295.1at 5034.698 kb on + strand, within Xcc-8004.5295.1at 5034.698 kb on + strand, within Xcc-8004.5295.1at 5034.699 kb on - strand, within Xcc-8004.5295.1at 5034.699 kb on - strand, within Xcc-8004.5295.1at 5034.699 kb on - strand, within Xcc-8004.5295.1at 5034.895 kb on + strand, within Xcc-8004.5295.1at 5034.895 kb on + strand, within Xcc-8004.5295.1at 5034.895 kb on + strand, within Xcc-8004.5295.1at 5034.895 kb on + strand, within Xcc-8004.5295.1at 5034.895 kb on + strand, within Xcc-8004.5295.1at 5034.896 kb on - strand, within Xcc-8004.5295.1at 5034.896 kb on - strand, within Xcc-8004.5295.1at 5034.896 kb on - strand, within Xcc-8004.5295.1at 5034.896 kb on - strand, within Xcc-8004.5295.1at 5034.896 kb on - strand, within Xcc-8004.5295.1at 5034.902 kb on + strand, within Xcc-8004.5295.1at 5034.902 kb on + strand, within Xcc-8004.5295.1at 5034.902 kb on + strand, within Xcc-8004.5295.1at 5034.902 kb on + strand, within Xcc-8004.5295.1at 5034.902 kb on + strand, within Xcc-8004.5295.1at 5034.902 kb on + strand, within Xcc-8004.5295.1at 5034.902 kb on + strand, within Xcc-8004.5295.1at 5034.902 kb on + strand, within Xcc-8004.5295.1at 5034.902 kb on + strand, within Xcc-8004.5295.1at 5034.903 kb on - strand, within Xcc-8004.5295.1at 5034.937 kb on + strand, within Xcc-8004.5295.1at 5034.937 kb on + strand, within Xcc-8004.5295.1at 5034.937 kb on + strand, within Xcc-8004.5295.1at 5034.938 kb on - strand, within Xcc-8004.5295.1at 5034.938 kb on - strand, within Xcc-8004.5295.1at 5034.938 kb on - strand, within Xcc-8004.5295.1at 5034.938 kb on - strand, within Xcc-8004.5295.1at 5034.938 kb on - strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.948 kb on + strand, within Xcc-8004.5295.1at 5034.949 kb on - strand, within Xcc-8004.5295.1at 5034.949 kb on - strand, within Xcc-8004.5295.1at 5034.949 kb on - strand, within Xcc-8004.5295.1at 5034.949 kb on - strand, within Xcc-8004.5295.1at 5034.949 kb on - strand, within Xcc-8004.5295.1at 5034.949 kb on - strand, within Xcc-8004.5295.1at 5034.949 kb on - strand, within Xcc-8004.5295.1at 5035.001 kb on + strandat 5035.001 kb on + strandat 5035.002 kb on - strandat 5035.060 kb on + strandat 5035.060 kb on + strandat 5035.060 kb on + strandat 5035.061 kb on - strandat 5035.061 kb on - strandat 5035.061 kb on - strandat 5035.061 kb on - strandat 5035.072 kb on + strandat 5035.073 kb on - strandat 5035.100 kb on - strandat 5035.100 kb on - strandat 5035.100 kb on - strandat 5035.112 kb on + strandat 5035.112 kb on + strandat 5035.112 kb on + strandat 5035.112 kb on + strandat 5035.112 kb on + strandat 5035.112 kb on + strandat 5035.112 kb on + strandat 5035.112 kb on + strandat 5035.112 kb on + strandat 5035.113 kb on - strandat 5035.113 kb on - strandat 5035.113 kb on - strandat 5035.113 kb on - strandat 5035.113 kb on - strandat 5035.113 kb on - strandat 5035.113 kb on - strandat 5035.120 kb on - strandat 5035.120 kb on - strandat 5035.120 kb on - strandat 5035.136 kb on - strandat 5035.136 kb on - strandat 5035.136 kb on - strandat 5035.315 kb on + strand, within Xcc-8004.5296.1at 5035.315 kb on + strand, within Xcc-8004.5296.1at 5035.316 kb on - strand, within Xcc-8004.5296.1at 5035.368 kb on - strandat 5035.384 kb on - strand, within Xcc-8004.5297.1at 5035.384 kb on - strand, within Xcc-8004.5297.1at 5035.384 kb on - strand, within Xcc-8004.5297.1at 5035.393 kb on - strand, within Xcc-8004.5297.1at 5035.393 kb on - strand, within Xcc-8004.5297.1at 5035.393 kb on - strand, within Xcc-8004.5297.1at 5035.393 kb on - strand, within Xcc-8004.5297.1at 5035.393 kb on - strand, within Xcc-8004.5297.1at 5035.402 kb on - strand, within Xcc-8004.5297.1at 5035.506 kb on + strand, within Xcc-8004.5297.1at 5035.526 kb on + strand, within Xcc-8004.5297.1at 5035.580 kb on - strand, within Xcc-8004.5297.1at 5035.638 kb on - strandat 5035.638 kb on - strandat 5035.638 kb on - strandat 5035.638 kb on - strandat 5035.658 kb on - strandat 5035.673 kb on + strandat 5035.673 kb on + strandat 5035.673 kb on + strandat 5035.674 kb on - strandat 5035.674 kb on - strandat 5035.674 kb on - strandat 5035.674 kb on - strandat 5035.674 kb on - strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.751 kb on + strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.752 kb on - strandat 5035.753 kb on + strandat 5035.753 kb on + strandat 5035.753 kb on + strandat 5035.753 kb on + strandat 5035.753 kb on + strandat 5035.753 kb on + strandat 5035.754 kb on - strandat 5035.754 kb on - strandat 5035.754 kb on - strandat 5035.793 kb on + strandat 5035.793 kb on + strandat 5035.794 kb on - strandat 5035.794 kb on - strandat 5036.027 kb on + strand, within Xcc-8004.5298.1at 5036.027 kb on + strand, within Xcc-8004.5298.1at 5036.027 kb on + strand, within Xcc-8004.5298.1at 5036.028 kb on - strand, within Xcc-8004.5298.1at 5036.066 kb on + strand, within Xcc-8004.5298.1at 5036.067 kb on - strand, within Xcc-8004.5298.1at 5036.086 kb on + strand, within Xcc-8004.5298.1at 5036.086 kb on + strand, within Xcc-8004.5298.1at 5036.087 kb on - strand, within Xcc-8004.5298.1at 5036.087 kb on - strand, within Xcc-8004.5298.1at 5036.087 kb on - strand, within Xcc-8004.5298.1at 5036.180 kb on + strand, within Xcc-8004.5298.1at 5036.181 kb on - strand, within Xcc-8004.5298.1at 5036.282 kb on + strand, within Xcc-8004.5298.1at 5036.282 kb on + strand, within Xcc-8004.5298.1at 5036.282 kb on + strand, within Xcc-8004.5298.1at 5036.282 kb on + strand, within Xcc-8004.5298.1at 5036.282 kb on + strand, within Xcc-8004.5298.1at 5036.282 kb on + strand, within Xcc-8004.5298.1at 5036.282 kb on + strand, within Xcc-8004.5298.1at 5036.282 kb on + strand, within Xcc-8004.5298.1at 5036.283 kb on - strand, within Xcc-8004.5298.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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5,034,372 + -0.1
5,034,383 + -0.1
5,034,398 + -2.5
5,034,398 + +1.2
5,034,398 + -2.0
5,034,398 + +1.2
5,034,398 + -0.2
5,034,398 + -2.5
5,034,399 - +0.1
5,034,399 - -0.1
5,034,399 - -0.1
5,034,399 - -0.0
5,034,399 - -0.1
5,034,399 - +2.4
5,034,401 + -0.2
5,034,401 + -1.2
5,034,401 + -1.5
5,034,401 + -1.0
5,034,401 + -1.3
5,034,401 + -0.3
5,034,401 + -3.1
5,034,401 + +0.1
5,034,401 + +1.8
5,034,402 - -0.9
5,034,402 - +2.1
5,034,402 - +0.5
5,034,402 - -0.3
5,034,402 - +0.8
5,034,402 - +0.1
5,034,402 - +2.9
5,034,402 - +2.8
5,034,618 - Xcc-8004.5295.1 0.35 -0.9
5,034,618 - Xcc-8004.5295.1 0.35 -1.3
5,034,618 - Xcc-8004.5295.1 0.35 -0.6
5,034,638 + Xcc-8004.5295.1 0.38 -0.1
5,034,638 + Xcc-8004.5295.1 0.38 -2.9
5,034,638 + Xcc-8004.5295.1 0.38 -0.5
5,034,638 + Xcc-8004.5295.1 0.38 +1.0
5,034,638 + Xcc-8004.5295.1 0.38 -1.3
5,034,638 + Xcc-8004.5295.1 0.38 -0.2
5,034,638 + Xcc-8004.5295.1 0.38 +0.5
5,034,638 + Xcc-8004.5295.1 0.38 -3.0
5,034,638 + Xcc-8004.5295.1 0.38 +2.0
5,034,638 + Xcc-8004.5295.1 0.38 +1.0
5,034,638 + Xcc-8004.5295.1 0.38 -0.3
5,034,639 - Xcc-8004.5295.1 0.38 +0.2
5,034,639 - Xcc-8004.5295.1 0.38 +0.3
5,034,639 - Xcc-8004.5295.1 0.38 -0.4
5,034,639 - Xcc-8004.5295.1 0.38 +0.3
5,034,639 - Xcc-8004.5295.1 0.38 +1.8
5,034,639 - Xcc-8004.5295.1 0.38 -0.1
5,034,639 - Xcc-8004.5295.1 0.38 -0.3
5,034,639 - Xcc-8004.5295.1 0.38 -1.1
5,034,639 - Xcc-8004.5295.1 0.38 +0.2
5,034,639 - Xcc-8004.5295.1 0.38 +0.9
5,034,648 - Xcc-8004.5295.1 0.39 -0.4
5,034,648 - Xcc-8004.5295.1 0.39 -0.5
5,034,698 + Xcc-8004.5295.1 0.47 -2.4
5,034,698 + Xcc-8004.5295.1 0.47 +0.6
5,034,698 + Xcc-8004.5295.1 0.47 +0.4
5,034,698 + Xcc-8004.5295.1 0.47 -2.1
5,034,699 - Xcc-8004.5295.1 0.47 -0.8
5,034,699 - Xcc-8004.5295.1 0.47 -0.2
5,034,699 - Xcc-8004.5295.1 0.47 -0.7
5,034,895 + Xcc-8004.5295.1 0.76 -1.8
5,034,895 + Xcc-8004.5295.1 0.76 +1.5
5,034,895 + Xcc-8004.5295.1 0.76 +0.3
5,034,895 + Xcc-8004.5295.1 0.76 +2.5
5,034,895 + Xcc-8004.5295.1 0.76 +0.3
5,034,896 - Xcc-8004.5295.1 0.76 +1.9
5,034,896 - Xcc-8004.5295.1 0.76 +0.1
5,034,896 - Xcc-8004.5295.1 0.76 -2.2
5,034,896 - Xcc-8004.5295.1 0.76 +0.4
5,034,896 - Xcc-8004.5295.1 0.76 -1.1
5,034,902 + Xcc-8004.5295.1 0.77 -1.6
5,034,902 + Xcc-8004.5295.1 0.77 -0.4
5,034,902 + Xcc-8004.5295.1 0.77 +0.1
5,034,902 + Xcc-8004.5295.1 0.77 -2.1
5,034,902 + Xcc-8004.5295.1 0.77 +0.9
5,034,902 + Xcc-8004.5295.1 0.77 -0.4
5,034,902 + Xcc-8004.5295.1 0.77 +0.3
5,034,902 + Xcc-8004.5295.1 0.77 -0.4
5,034,902 + Xcc-8004.5295.1 0.77 -0.1
5,034,903 - Xcc-8004.5295.1 0.77 +1.5
5,034,937 + Xcc-8004.5295.1 0.82 -3.3
5,034,937 + Xcc-8004.5295.1 0.82 -0.2
5,034,937 + Xcc-8004.5295.1 0.82 -2.4
5,034,938 - Xcc-8004.5295.1 0.82 +0.6
5,034,938 - Xcc-8004.5295.1 0.82 -2.5
5,034,938 - Xcc-8004.5295.1 0.82 +0.5
5,034,938 - Xcc-8004.5295.1 0.82 -1.9
5,034,938 - Xcc-8004.5295.1 0.82 +0.6
5,034,948 + Xcc-8004.5295.1 0.83 -0.3
5,034,948 + Xcc-8004.5295.1 0.83 -2.1
5,034,948 + Xcc-8004.5295.1 0.83 +0.2
5,034,948 + Xcc-8004.5295.1 0.83 -0.2
5,034,948 + Xcc-8004.5295.1 0.83 -1.7
5,034,948 + Xcc-8004.5295.1 0.83 -1.8
5,034,948 + Xcc-8004.5295.1 0.83 +0.2
5,034,948 + Xcc-8004.5295.1 0.83 -0.5
5,034,948 + Xcc-8004.5295.1 0.83 +1.2
5,034,948 + Xcc-8004.5295.1 0.83 +0.9
5,034,948 + Xcc-8004.5295.1 0.83 +1.1
5,034,949 - Xcc-8004.5295.1 0.84 -1.4
5,034,949 - Xcc-8004.5295.1 0.84 +0.1
5,034,949 - Xcc-8004.5295.1 0.84 +0.6
5,034,949 - Xcc-8004.5295.1 0.84 -0.6
5,034,949 - Xcc-8004.5295.1 0.84 -0.6
5,034,949 - Xcc-8004.5295.1 0.84 +0.8
5,034,949 - Xcc-8004.5295.1 0.84 +2.2
5,035,001 + -1.8
5,035,001 + -0.0
5,035,002 - -0.1
5,035,060 + +1.1
5,035,060 + -0.9
5,035,060 + +1.9
5,035,061 - +1.2
5,035,061 - -0.8
5,035,061 - +0.5
5,035,061 - +0.9
5,035,072 + +1.5
5,035,073 - -2.4
5,035,100 - +1.1
5,035,100 - +1.2
5,035,100 - -2.0
5,035,112 + -0.1
5,035,112 + +1.8
5,035,112 + -0.7
5,035,112 + +0.3
5,035,112 + +1.7
5,035,112 + +2.4
5,035,112 + -1.7
5,035,112 + -0.7
5,035,112 + -1.1
5,035,113 - -3.1
5,035,113 - +0.8
5,035,113 - -0.3
5,035,113 - +0.7
5,035,113 - +1.9
5,035,113 - -0.2
5,035,113 - +0.3
5,035,120 - +0.6
5,035,120 - -1.0
5,035,120 - -2.4
5,035,136 - +1.2
5,035,136 - +0.6
5,035,136 - +0.7
5,035,315 + Xcc-8004.5296.1 0.69 +0.9
5,035,315 + Xcc-8004.5296.1 0.69 -2.1
5,035,316 - Xcc-8004.5296.1 0.70 -0.4
5,035,368 - +2.9
5,035,384 - Xcc-8004.5297.1 0.14 +0.2
5,035,384 - Xcc-8004.5297.1 0.14 -1.6
5,035,384 - Xcc-8004.5297.1 0.14 +0.4
5,035,393 - Xcc-8004.5297.1 0.17 -0.3
5,035,393 - Xcc-8004.5297.1 0.17 -2.0
5,035,393 - Xcc-8004.5297.1 0.17 +0.8
5,035,393 - Xcc-8004.5297.1 0.17 -0.6
5,035,393 - Xcc-8004.5297.1 0.17 -2.2
5,035,402 - Xcc-8004.5297.1 0.20 -1.1
5,035,506 + Xcc-8004.5297.1 0.55 -0.3
5,035,526 + Xcc-8004.5297.1 0.62 -2.1
5,035,580 - Xcc-8004.5297.1 0.80 +1.2
5,035,638 - -1.9
5,035,638 - +0.5
5,035,638 - -2.4
5,035,638 - +0.1
5,035,658 - -1.5
5,035,673 + -2.1
5,035,673 + +0.1
5,035,673 + -0.2
5,035,674 - -0.7
5,035,674 - +0.7
5,035,674 - +1.2
5,035,674 - -0.6
5,035,674 - -0.0
5,035,751 + -0.8
5,035,751 + +2.5
5,035,751 + +0.6
5,035,751 + +0.0
5,035,751 + -0.0
5,035,751 + -1.2
5,035,751 + -1.9
5,035,751 + +0.9
5,035,751 + -1.4
5,035,751 + +0.1
5,035,751 + -1.8
5,035,751 + +2.4
5,035,751 + +0.3
5,035,752 - +0.4
5,035,752 - +0.3
5,035,752 - +0.9
5,035,752 - +1.8
5,035,752 - -1.7
5,035,752 - -1.2
5,035,752 - -1.2
5,035,752 - +0.5
5,035,752 - +0.7
5,035,752 - +1.1
5,035,752 - -0.1
5,035,752 - +0.4
5,035,752 - -1.9
5,035,753 + -1.6
5,035,753 + -0.7
5,035,753 + -0.4
5,035,753 + +0.3
5,035,753 + +0.6
5,035,753 + +0.2
5,035,754 - -1.2
5,035,754 - +2.0
5,035,754 - +1.1
5,035,793 + +2.4
5,035,793 + -0.9
5,035,794 - +1.0
5,035,794 - -1.7
5,036,027 + Xcc-8004.5298.1 0.27 -2.1
5,036,027 + Xcc-8004.5298.1 0.27 +0.7
5,036,027 + Xcc-8004.5298.1 0.27 -1.8
5,036,028 - Xcc-8004.5298.1 0.28 -2.9
5,036,066 + Xcc-8004.5298.1 0.32 -0.1
5,036,067 - Xcc-8004.5298.1 0.32 +0.5
5,036,086 + Xcc-8004.5298.1 0.35 +0.1
5,036,086 + Xcc-8004.5298.1 0.35 -2.0
5,036,087 - Xcc-8004.5298.1 0.35 -1.7
5,036,087 - Xcc-8004.5298.1 0.35 +0.1
5,036,087 - Xcc-8004.5298.1 0.35 -2.0
5,036,180 + Xcc-8004.5298.1 0.47 -1.1
5,036,181 - Xcc-8004.5298.1 0.47 -0.6
5,036,282 + Xcc-8004.5298.1 0.60 +0.4
5,036,282 + Xcc-8004.5298.1 0.60 +0.7
5,036,282 + Xcc-8004.5298.1 0.60 +1.8
5,036,282 + Xcc-8004.5298.1 0.60 -2.6
5,036,282 + Xcc-8004.5298.1 0.60 +0.3
5,036,282 + Xcc-8004.5298.1 0.60 +1.9
5,036,282 + Xcc-8004.5298.1 0.60 -1.4
5,036,282 + Xcc-8004.5298.1 0.60 +1.6
5,036,283 - Xcc-8004.5298.1 0.60 -0.6

Or see this region's nucleotide sequence