Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4810.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4809.1 and Xcc-8004.4810.1 are separated by 54 nucleotidesXcc-8004.4810.1 and Xcc-8004.4812.1 are separated by 141 nucleotides Xcc-8004.4809.1: Xcc-8004.4809.1 - FIG01210473: hypothetical protein, at 4,577,664 to 4,579,025 Xcc-8004.4809.1 Xcc-8004.4810.1: Xcc-8004.4810.1 - hypothetical protein, at 4,579,080 to 4,579,631 Xcc-8004.4810.1 Xcc-8004.4812.1: Xcc-8004.4812.1 - FIG01211332: hypothetical protein, at 4,579,773 to 4,580,690 Xcc-8004.4812.1 Position (kb) 4579 4580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.196 kb on + strand, within Xcc-8004.4809.1at 4578.275 kb on + strand, within Xcc-8004.4809.1at 4578.275 kb on + strand, within Xcc-8004.4809.1at 4578.276 kb on - strand, within Xcc-8004.4809.1at 4578.276 kb on - strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.284 kb on + strand, within Xcc-8004.4809.1at 4578.284 kb on + strand, within Xcc-8004.4809.1at 4578.284 kb on + strand, within Xcc-8004.4809.1at 4578.356 kb on + strand, within Xcc-8004.4809.1at 4578.476 kb on - strand, within Xcc-8004.4809.1at 4578.476 kb on - strand, within Xcc-8004.4809.1at 4578.491 kb on + strand, within Xcc-8004.4809.1at 4578.533 kb on + strand, within Xcc-8004.4809.1at 4578.588 kb on - strand, within Xcc-8004.4809.1at 4578.605 kb on - strand, within Xcc-8004.4809.1at 4578.605 kb on - strand, within Xcc-8004.4809.1at 4578.700 kb on + strand, within Xcc-8004.4809.1at 4578.718 kb on + strand, within Xcc-8004.4809.1at 4578.719 kb on - strand, within Xcc-8004.4809.1at 4578.719 kb on - strand, within Xcc-8004.4809.1at 4578.719 kb on - strand, within Xcc-8004.4809.1at 4578.823 kb on + strand, within Xcc-8004.4809.1at 4578.824 kb on - strand, within Xcc-8004.4809.1at 4578.828 kb on - strand, within Xcc-8004.4809.1at 4578.828 kb on - strand, within Xcc-8004.4809.1at 4578.855 kb on - strand, within Xcc-8004.4809.1at 4578.956 kb on + strandat 4578.956 kb on + strandat 4578.956 kb on + strandat 4578.957 kb on - strandat 4578.957 kb on - strandat 4578.989 kb on + strandat 4578.989 kb on + strandat 4579.038 kb on + strandat 4579.039 kb on - strandat 4579.039 kb on - strandat 4579.042 kb on + strandat 4579.043 kb on - strandat 4579.054 kb on + strandat 4579.054 kb on + strandat 4579.054 kb on + strandat 4579.143 kb on + strand, within Xcc-8004.4810.1at 4579.143 kb on + strand, within Xcc-8004.4810.1at 4579.144 kb on - strand, within Xcc-8004.4810.1at 4579.144 kb on - strand, within Xcc-8004.4810.1at 4579.144 kb on - strand, within Xcc-8004.4810.1at 4579.144 kb on - strand, within Xcc-8004.4810.1at 4579.144 kb on - strand, within Xcc-8004.4810.1at 4579.174 kb on + strand, within Xcc-8004.4810.1at 4579.174 kb on + strand, within Xcc-8004.4810.1at 4579.174 kb on + strand, within Xcc-8004.4810.1at 4579.175 kb on - strand, within Xcc-8004.4810.1at 4579.175 kb on - strand, within Xcc-8004.4810.1at 4579.175 kb on - strand, within Xcc-8004.4810.1at 4579.178 kb on - strand, within Xcc-8004.4810.1at 4579.178 kb on - strand, within Xcc-8004.4810.1at 4579.270 kb on + strand, within Xcc-8004.4810.1at 4579.270 kb on + strand, within Xcc-8004.4810.1at 4579.270 kb on + strand, within Xcc-8004.4810.1at 4579.270 kb on + strand, within Xcc-8004.4810.1at 4579.271 kb on - strand, within Xcc-8004.4810.1at 4579.271 kb on - strand, within Xcc-8004.4810.1at 4579.352 kb on + strand, within Xcc-8004.4810.1at 4579.352 kb on + strand, within Xcc-8004.4810.1at 4579.355 kb on + strand, within Xcc-8004.4810.1at 4579.370 kb on - strand, within Xcc-8004.4810.1at 4579.436 kb on + strand, within Xcc-8004.4810.1at 4579.437 kb on - strand, within Xcc-8004.4810.1at 4579.487 kb on + strand, within Xcc-8004.4810.1at 4579.488 kb on - strand, within Xcc-8004.4810.1at 4579.568 kb on + strand, within Xcc-8004.4810.1at 4579.568 kb on + strand, within Xcc-8004.4810.1at 4579.568 kb on + strand, within Xcc-8004.4810.1at 4579.568 kb on + strand, within Xcc-8004.4810.1at 4579.568 kb on + strand, within Xcc-8004.4810.1at 4579.568 kb on + strand, within Xcc-8004.4810.1at 4579.569 kb on - strand, within Xcc-8004.4810.1at 4579.569 kb on - strand, within Xcc-8004.4810.1at 4579.569 kb on - strand, within Xcc-8004.4810.1at 4579.569 kb on - strand, within Xcc-8004.4810.1at 4579.569 kb on - strand, within Xcc-8004.4810.1at 4579.587 kb on + strandat 4579.705 kb on - strandat 4579.705 kb on - strandat 4579.706 kb on + strandat 4579.707 kb on - strandat 4579.725 kb on - strandat 4579.747 kb on + strandat 4579.748 kb on - strandat 4579.761 kb on + strandat 4579.762 kb on - strandat 4579.793 kb on + strandat 4579.793 kb on + strandat 4579.793 kb on + strandat 4579.793 kb on + strandat 4579.793 kb on + strandat 4579.794 kb on - strandat 4579.794 kb on - strandat 4579.794 kb on - strandat 4579.794 kb on - strandat 4579.795 kb on + strandat 4579.795 kb on + strandat 4579.795 kb on + strandat 4579.795 kb on + strandat 4579.796 kb on - strandat 4579.796 kb on - strandat 4579.816 kb on + strandat 4579.816 kb on + strandat 4579.817 kb on - strandat 4579.822 kb on + strandat 4579.822 kb on + strandat 4579.822 kb on + strandat 4579.822 kb on + strandat 4579.823 kb on - strandat 4579.823 kb on - strandat 4579.823 kb on - strandat 4579.994 kb on + strand, within Xcc-8004.4812.1at 4579.994 kb on + strand, within Xcc-8004.4812.1at 4580.026 kb on + strand, within Xcc-8004.4812.1at 4580.026 kb on + strand, within Xcc-8004.4812.1at 4580.026 kb on + strand, within Xcc-8004.4812.1at 4580.026 kb on + strand, within Xcc-8004.4812.1at 4580.027 kb on - strand, within Xcc-8004.4812.1at 4580.041 kb on + strand, within Xcc-8004.4812.1at 4580.042 kb on - strand, within Xcc-8004.4812.1at 4580.075 kb on + strand, within Xcc-8004.4812.1at 4580.076 kb on - strand, within Xcc-8004.4812.1at 4580.076 kb on - strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.300 kb on + strand, within Xcc-8004.4812.1at 4580.300 kb on + strand, within Xcc-8004.4812.1at 4580.350 kb on + strand, within Xcc-8004.4812.1at 4580.350 kb on + strand, within Xcc-8004.4812.1at 4580.383 kb on + strand, within Xcc-8004.4812.1at 4580.383 kb on + strand, within Xcc-8004.4812.1at 4580.383 kb on + strand, within Xcc-8004.4812.1at 4580.383 kb on + strand, within Xcc-8004.4812.1at 4580.383 kb on + strand, within Xcc-8004.4812.1at 4580.384 kb on - strand, within Xcc-8004.4812.1at 4580.386 kb on + strand, within Xcc-8004.4812.1at 4580.386 kb on + strand, within Xcc-8004.4812.1at 4580.387 kb on - strand, within Xcc-8004.4812.1at 4580.387 kb on - strand, within Xcc-8004.4812.1at 4580.387 kb on - strand, within Xcc-8004.4812.1at 4580.387 kb on - strand, within Xcc-8004.4812.1at 4580.455 kb on + strand, within Xcc-8004.4812.1at 4580.456 kb on - strand, within Xcc-8004.4812.1at 4580.456 kb on - strand, within Xcc-8004.4812.1at 4580.456 kb on - strand, within Xcc-8004.4812.1at 4580.456 kb on - strand, within Xcc-8004.4812.1at 4580.456 kb on - strand, within Xcc-8004.4812.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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4,578,166 + Xcc-8004.4809.1 0.37 -1.7
4,578,166 + Xcc-8004.4809.1 0.37 +1.0
4,578,166 + Xcc-8004.4809.1 0.37 -0.9
4,578,166 + Xcc-8004.4809.1 0.37 +0.3
4,578,166 + Xcc-8004.4809.1 0.37 -0.6
4,578,166 + Xcc-8004.4809.1 0.37 -0.8
4,578,166 + Xcc-8004.4809.1 0.37 +0.2
4,578,167 - Xcc-8004.4809.1 0.37 +1.8
4,578,167 - Xcc-8004.4809.1 0.37 +3.3
4,578,167 - Xcc-8004.4809.1 0.37 -2.2
4,578,167 - Xcc-8004.4809.1 0.37 +0.5
4,578,167 - Xcc-8004.4809.1 0.37 +0.3
4,578,167 - Xcc-8004.4809.1 0.37 -0.3
4,578,167 - Xcc-8004.4809.1 0.37 +0.7
4,578,196 + Xcc-8004.4809.1 0.39 -2.4
4,578,275 + Xcc-8004.4809.1 0.45 -0.1
4,578,275 + Xcc-8004.4809.1 0.45 +0.4
4,578,276 - Xcc-8004.4809.1 0.45 -0.1
4,578,276 - Xcc-8004.4809.1 0.45 -0.4
4,578,279 + Xcc-8004.4809.1 0.45 +0.0
4,578,279 + Xcc-8004.4809.1 0.45 -1.1
4,578,279 + Xcc-8004.4809.1 0.45 -2.0
4,578,279 + Xcc-8004.4809.1 0.45 -2.5
4,578,279 + Xcc-8004.4809.1 0.45 +1.0
4,578,279 + Xcc-8004.4809.1 0.45 +1.1
4,578,279 + Xcc-8004.4809.1 0.45 +0.5
4,578,279 + Xcc-8004.4809.1 0.45 +0.2
4,578,279 + Xcc-8004.4809.1 0.45 -1.7
4,578,280 - Xcc-8004.4809.1 0.45 -0.4
4,578,280 - Xcc-8004.4809.1 0.45 -2.8
4,578,280 - Xcc-8004.4809.1 0.45 -0.1
4,578,280 - Xcc-8004.4809.1 0.45 +0.8
4,578,280 - Xcc-8004.4809.1 0.45 +0.6
4,578,280 - Xcc-8004.4809.1 0.45 +0.1
4,578,280 - Xcc-8004.4809.1 0.45 -1.3
4,578,280 - Xcc-8004.4809.1 0.45 +0.4
4,578,284 + Xcc-8004.4809.1 0.46 +1.4
4,578,284 + Xcc-8004.4809.1 0.46 +0.4
4,578,284 + Xcc-8004.4809.1 0.46 +0.4
4,578,356 + Xcc-8004.4809.1 0.51 -0.0
4,578,476 - Xcc-8004.4809.1 0.60 -0.4
4,578,476 - Xcc-8004.4809.1 0.60 -0.6
4,578,491 + Xcc-8004.4809.1 0.61 +0.8
4,578,533 + Xcc-8004.4809.1 0.64 -1.0
4,578,588 - Xcc-8004.4809.1 0.68 +1.1
4,578,605 - Xcc-8004.4809.1 0.69 -1.2
4,578,605 - Xcc-8004.4809.1 0.69 +0.6
4,578,700 + Xcc-8004.4809.1 0.76 +0.7
4,578,718 + Xcc-8004.4809.1 0.77 -0.6
4,578,719 - Xcc-8004.4809.1 0.77 -0.1
4,578,719 - Xcc-8004.4809.1 0.77 -1.4
4,578,719 - Xcc-8004.4809.1 0.77 -0.2
4,578,823 + Xcc-8004.4809.1 0.85 +2.0
4,578,824 - Xcc-8004.4809.1 0.85 -0.3
4,578,828 - Xcc-8004.4809.1 0.85 -0.1
4,578,828 - Xcc-8004.4809.1 0.85 -1.2
4,578,855 - Xcc-8004.4809.1 0.87 -0.6
4,578,956 + +1.8
4,578,956 + +1.5
4,578,956 + +0.0
4,578,957 - +0.1
4,578,957 - -1.6
4,578,989 + -0.7
4,578,989 + +2.2
4,579,038 + +0.5
4,579,039 - -0.6
4,579,039 - -0.3
4,579,042 + +0.4
4,579,043 - -1.1
4,579,054 + -2.1
4,579,054 + +1.7
4,579,054 + +0.5
4,579,143 + Xcc-8004.4810.1 0.11 -1.3
4,579,143 + Xcc-8004.4810.1 0.11 -0.2
4,579,144 - Xcc-8004.4810.1 0.12 -0.8
4,579,144 - Xcc-8004.4810.1 0.12 -0.1
4,579,144 - Xcc-8004.4810.1 0.12 +0.9
4,579,144 - Xcc-8004.4810.1 0.12 -0.7
4,579,144 - Xcc-8004.4810.1 0.12 -2.0
4,579,174 + Xcc-8004.4810.1 0.17 -2.2
4,579,174 + Xcc-8004.4810.1 0.17 -1.5
4,579,174 + Xcc-8004.4810.1 0.17 -1.1
4,579,175 - Xcc-8004.4810.1 0.17 -1.0
4,579,175 - Xcc-8004.4810.1 0.17 -2.8
4,579,175 - Xcc-8004.4810.1 0.17 -1.5
4,579,178 - Xcc-8004.4810.1 0.18 -1.7
4,579,178 - Xcc-8004.4810.1 0.18 +0.5
4,579,270 + Xcc-8004.4810.1 0.34 -1.6
4,579,270 + Xcc-8004.4810.1 0.34 -3.0
4,579,270 + Xcc-8004.4810.1 0.34 -1.2
4,579,270 + Xcc-8004.4810.1 0.34 -0.3
4,579,271 - Xcc-8004.4810.1 0.35 -0.8
4,579,271 - Xcc-8004.4810.1 0.35 -1.9
4,579,352 + Xcc-8004.4810.1 0.49 -0.6
4,579,352 + Xcc-8004.4810.1 0.49 -0.5
4,579,355 + Xcc-8004.4810.1 0.50 -0.0
4,579,370 - Xcc-8004.4810.1 0.53 +0.4
4,579,436 + Xcc-8004.4810.1 0.64 -1.1
4,579,437 - Xcc-8004.4810.1 0.65 -1.5
4,579,487 + Xcc-8004.4810.1 0.74 -0.7
4,579,488 - Xcc-8004.4810.1 0.74 -1.0
4,579,568 + Xcc-8004.4810.1 0.88 -0.1
4,579,568 + Xcc-8004.4810.1 0.88 -1.0
4,579,568 + Xcc-8004.4810.1 0.88 +1.6
4,579,568 + Xcc-8004.4810.1 0.88 -2.7
4,579,568 + Xcc-8004.4810.1 0.88 -0.2
4,579,568 + Xcc-8004.4810.1 0.88 -0.8
4,579,569 - Xcc-8004.4810.1 0.89 -0.7
4,579,569 - Xcc-8004.4810.1 0.89 -1.4
4,579,569 - Xcc-8004.4810.1 0.89 -3.3
4,579,569 - Xcc-8004.4810.1 0.89 -0.2
4,579,569 - Xcc-8004.4810.1 0.89 -0.2
4,579,587 + +0.1
4,579,705 - +1.1
4,579,705 - -1.7
4,579,706 + -1.9
4,579,707 - -0.8
4,579,725 - -1.9
4,579,747 + +0.1
4,579,748 - +1.9
4,579,761 + -2.0
4,579,762 - -0.6
4,579,793 + -0.4
4,579,793 + +0.7
4,579,793 + +0.4
4,579,793 + +0.6
4,579,793 + +1.6
4,579,794 - +2.3
4,579,794 - +0.2
4,579,794 - -1.4
4,579,794 - -0.4
4,579,795 + +0.9
4,579,795 + +0.8
4,579,795 + +0.4
4,579,795 + +1.1
4,579,796 - +0.7
4,579,796 - -0.8
4,579,816 + -0.5
4,579,816 + +0.6
4,579,817 - +1.1
4,579,822 + -1.3
4,579,822 + +0.2
4,579,822 + -0.9
4,579,822 + +1.2
4,579,823 - +0.4
4,579,823 - -1.2
4,579,823 - -1.9
4,579,994 + Xcc-8004.4812.1 0.24 +0.4
4,579,994 + Xcc-8004.4812.1 0.24 +0.3
4,580,026 + Xcc-8004.4812.1 0.28 -1.6
4,580,026 + Xcc-8004.4812.1 0.28 -3.2
4,580,026 + Xcc-8004.4812.1 0.28 -0.9
4,580,026 + Xcc-8004.4812.1 0.28 -0.1
4,580,027 - Xcc-8004.4812.1 0.28 +1.0
4,580,041 + Xcc-8004.4812.1 0.29 -0.1
4,580,042 - Xcc-8004.4812.1 0.29 -0.3
4,580,075 + Xcc-8004.4812.1 0.33 -0.7
4,580,076 - Xcc-8004.4812.1 0.33 -3.1
4,580,076 - Xcc-8004.4812.1 0.33 -1.0
4,580,284 + Xcc-8004.4812.1 0.56 -1.1
4,580,284 + Xcc-8004.4812.1 0.56 +3.3
4,580,284 + Xcc-8004.4812.1 0.56 +0.4
4,580,284 + Xcc-8004.4812.1 0.56 +0.1
4,580,284 + Xcc-8004.4812.1 0.56 -1.1
4,580,284 + Xcc-8004.4812.1 0.56 -0.2
4,580,284 + Xcc-8004.4812.1 0.56 +0.4
4,580,285 - Xcc-8004.4812.1 0.56 +0.2
4,580,285 - Xcc-8004.4812.1 0.56 +2.1
4,580,285 - Xcc-8004.4812.1 0.56 -1.4
4,580,285 - Xcc-8004.4812.1 0.56 -0.3
4,580,285 - Xcc-8004.4812.1 0.56 -0.4
4,580,285 - Xcc-8004.4812.1 0.56 -0.6
4,580,285 - Xcc-8004.4812.1 0.56 +1.0
4,580,285 - Xcc-8004.4812.1 0.56 +0.0
4,580,285 - Xcc-8004.4812.1 0.56 +1.9
4,580,300 + Xcc-8004.4812.1 0.57 -0.7
4,580,300 + Xcc-8004.4812.1 0.57 -0.4
4,580,350 + Xcc-8004.4812.1 0.63 +0.9
4,580,350 + Xcc-8004.4812.1 0.63 +0.5
4,580,383 + Xcc-8004.4812.1 0.66 -0.3
4,580,383 + Xcc-8004.4812.1 0.66 +0.5
4,580,383 + Xcc-8004.4812.1 0.66 -2.3
4,580,383 + Xcc-8004.4812.1 0.66 +1.4
4,580,383 + Xcc-8004.4812.1 0.66 +0.4
4,580,384 - Xcc-8004.4812.1 0.67 -0.2
4,580,386 + Xcc-8004.4812.1 0.67 -0.1
4,580,386 + Xcc-8004.4812.1 0.67 -2.1
4,580,387 - Xcc-8004.4812.1 0.67 -1.6
4,580,387 - Xcc-8004.4812.1 0.67 -1.7
4,580,387 - Xcc-8004.4812.1 0.67 -2.9
4,580,387 - Xcc-8004.4812.1 0.67 -1.9
4,580,455 + Xcc-8004.4812.1 0.74 -2.7
4,580,456 - Xcc-8004.4812.1 0.74 -1.8
4,580,456 - Xcc-8004.4812.1 0.74 +1.5
4,580,456 - Xcc-8004.4812.1 0.74 -0.9
4,580,456 - Xcc-8004.4812.1 0.74 -2.0
4,580,456 - Xcc-8004.4812.1 0.74 +0.9

Or see this region's nucleotide sequence