Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4666.1 and Xcc-8004.4667.1 are separated by 177 nucleotides Xcc-8004.4667.1 and Xcc-8004.4668.1 overlap by 7 nucleotides Xcc-8004.4668.1 and Xcc-8004.4669.1 overlap by 4 nucleotides Xcc-8004.4669.1 and Xcc-8004.4671.1 are separated by 527 nucleotides Xcc-8004.4671.1 and Xcc-8004.4672.1 are separated by 53 nucleotides
Xcc-8004.4666.1: Xcc-8004.4666.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 4,445,314 to 4,448,871
Xcc-8004.4666.1
Xcc-8004.4667.1: Xcc-8004.4667.1 - Two-component system regulatory protein, at 4,449,049 to 4,449,432
Xcc-8004.4667.1
Xcc-8004.4668.1: Xcc-8004.4668.1 - FIG01210168: hypothetical protein, at 4,449,426 to 4,449,656
Xcc-8004.4668.1
Xcc-8004.4669.1: Xcc-8004.4669.1 - Transcriptional regulator NtrC family, at 4,449,653 to 4,450,936
Xcc-8004.4669.1
Xcc-8004.4671.1: Xcc-8004.4671.1 - FIG01212254: hypothetical protein, at 4,451,464 to 4,451,760
Xcc-8004.4671.1
Xcc-8004.4672.1: Xcc-8004.4672.1 - hypothetical protein, at 4,451,814 to 4,451,921
Xcc-8004.4672.1
Position (kb) 4449
4450
4451 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4448.800 kb on + strand at 4448.800 kb on + strand at 4448.800 kb on + strand at 4448.800 kb on + strand at 4448.800 kb on + strand at 4448.800 kb on + strand at 4448.801 kb on - strand at 4448.801 kb on - strand at 4448.801 kb on - strand at 4448.882 kb on + strand at 4448.882 kb on + strand at 4448.882 kb on + strand at 4448.882 kb on + strand at 4448.882 kb on + strand at 4448.882 kb on + strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.889 kb on + strand at 4448.889 kb on + strand at 4448.889 kb on + strand at 4448.889 kb on + strand at 4448.889 kb on + strand at 4448.889 kb on + strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.969 kb on + strand at 4448.969 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.996 kb on - strand at 4448.996 kb on - strand at 4448.996 kb on - strand at 4448.996 kb on - strand at 4449.019 kb on + strand at 4449.019 kb on + strand at 4449.019 kb on + strand at 4449.020 kb on - strand at 4449.027 kb on - strand at 4449.027 kb on - strand at 4449.027 kb on - strand at 4449.027 kb on - strand at 4449.035 kb on - strand at 4449.100 kb on + strand, within Xcc-8004.4667.1 at 4449.100 kb on + strand, within Xcc-8004.4667.1 at 4449.100 kb on + strand, within Xcc-8004.4667.1 at 4449.101 kb on - strand, within Xcc-8004.4667.1 at 4449.101 kb on - strand, within Xcc-8004.4667.1 at 4449.129 kb on - strand, within Xcc-8004.4667.1 at 4449.129 kb on - strand, within Xcc-8004.4667.1 at 4449.313 kb on + strand, within Xcc-8004.4667.1 at 4449.323 kb on - strand, within Xcc-8004.4667.1 at 4449.340 kb on + strand, within Xcc-8004.4667.1 at 4449.340 kb on + strand, within Xcc-8004.4667.1 at 4449.341 kb on - strand, within Xcc-8004.4667.1 at 4449.355 kb on + strand, within Xcc-8004.4667.1 at 4449.355 kb on + strand, within Xcc-8004.4667.1 at 4449.355 kb on + strand, within Xcc-8004.4667.1 at 4449.356 kb on - strand, within Xcc-8004.4667.1 at 4449.356 kb on - strand, within Xcc-8004.4667.1 at 4449.356 kb on - strand, within Xcc-8004.4667.1 at 4449.370 kb on + strand, within Xcc-8004.4667.1 at 4449.370 kb on + strand, within Xcc-8004.4667.1 at 4449.371 kb on - strand, within Xcc-8004.4667.1 at 4449.395 kb on + strand at 4449.395 kb on + strand at 4449.456 kb on + strand, within Xcc-8004.4668.1 at 4449.575 kb on - strand, within Xcc-8004.4668.1 at 4449.575 kb on - strand, within Xcc-8004.4668.1 at 4449.606 kb on - strand, within Xcc-8004.4668.1 at 4449.606 kb on - strand, within Xcc-8004.4668.1 at 4449.735 kb on + strand at 4449.736 kb on - strand at 4449.885 kb on + strand, within Xcc-8004.4669.1 at 4449.885 kb on + strand, within Xcc-8004.4669.1 at 4449.885 kb on + strand, within Xcc-8004.4669.1 at 4449.886 kb on - strand, within Xcc-8004.4669.1 at 4449.886 kb on - strand, within Xcc-8004.4669.1 at 4449.886 kb on - strand, within Xcc-8004.4669.1 at 4449.886 kb on - strand, within Xcc-8004.4669.1 at 4449.891 kb on + strand, within Xcc-8004.4669.1 at 4449.892 kb on - strand, within Xcc-8004.4669.1 at 4449.892 kb on - strand, within Xcc-8004.4669.1 at 4449.949 kb on - strand, within Xcc-8004.4669.1 at 4449.949 kb on - strand, within Xcc-8004.4669.1 at 4449.949 kb on - strand, within Xcc-8004.4669.1 at 4449.987 kb on + strand, within Xcc-8004.4669.1 at 4449.988 kb on - strand, within Xcc-8004.4669.1 at 4449.988 kb on - strand, within Xcc-8004.4669.1 at 4450.090 kb on - strand, within Xcc-8004.4669.1 at 4450.090 kb on - strand, within Xcc-8004.4669.1 at 4450.090 kb on - strand, within Xcc-8004.4669.1 at 4450.090 kb on - strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.228 kb on - strand, within Xcc-8004.4669.1 at 4450.228 kb on - strand, within Xcc-8004.4669.1 at 4450.228 kb on - strand, within Xcc-8004.4669.1 at 4450.228 kb on - strand, within Xcc-8004.4669.1 at 4450.532 kb on + strand, within Xcc-8004.4669.1 at 4450.532 kb on + strand, within Xcc-8004.4669.1 at 4450.532 kb on + strand, within Xcc-8004.4669.1 at 4450.533 kb on - strand, within Xcc-8004.4669.1 at 4450.533 kb on - strand, within Xcc-8004.4669.1 at 4450.533 kb on - strand, within Xcc-8004.4669.1 at 4450.686 kb on + strand, within Xcc-8004.4669.1 at 4450.686 kb on + strand, within Xcc-8004.4669.1 at 4450.687 kb on - strand, within Xcc-8004.4669.1 at 4450.687 kb on - strand, within Xcc-8004.4669.1 at 4450.936 kb on + strand at 4450.936 kb on + strand at 4450.936 kb on + strand at 4450.936 kb on + strand at 4450.959 kb on + strand at 4450.959 kb on + strand at 4450.959 kb on + strand at 4450.959 kb on + strand at 4450.960 kb on - strand at 4450.960 kb on - strand at 4450.960 kb on - strand at 4450.962 kb on + strand at 4450.962 kb on + strand at 4450.962 kb on + strand at 4450.963 kb on - strand at 4450.963 kb on - strand at 4450.963 kb on - strand at 4451.072 kb on - strand at 4451.119 kb on + strand at 4451.119 kb on + strand at 4451.119 kb on + strand at 4451.119 kb on + strand at 4451.120 kb on - strand at 4451.180 kb on + strand at 4451.181 kb on - strand at 4451.358 kb on + strand at 4451.358 kb on + strand at 4451.358 kb on + strand at 4451.359 kb on - strand at 4451.369 kb on + strand at 4451.370 kb on - strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.396 kb on - strand at 4451.396 kb on - strand at 4451.566 kb on + strand, within Xcc-8004.4671.1 at 4451.566 kb on + strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.570 kb on - strand, within Xcc-8004.4671.1 at 4451.874 kb on + strand, within Xcc-8004.4672.1 at 4451.874 kb on + strand, within Xcc-8004.4672.1 at 4451.875 kb on - strand, within Xcc-8004.4672.1 at 4451.875 kb on - strand, within Xcc-8004.4672.1 at 4451.875 kb on - strand, within Xcc-8004.4672.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 4,448,800 + +0.3 4,448,800 + +0.9 4,448,800 + -1.1 4,448,800 + -0.1 4,448,800 + +0.3 4,448,800 + +1.5 4,448,801 - +0.3 4,448,801 - -0.1 4,448,801 - +0.2 4,448,882 + +0.1 4,448,882 + -1.9 4,448,882 + +0.1 4,448,882 + -0.2 4,448,882 + -0.6 4,448,882 + -1.7 4,448,883 - -0.5 4,448,883 - +0.1 4,448,883 - +1.3 4,448,883 - +0.0 4,448,883 - -1.5 4,448,883 - -0.1 4,448,883 - -3.0 4,448,889 + +0.9 4,448,889 + +0.3 4,448,889 + -1.2 4,448,889 + -2.0 4,448,889 + +1.6 4,448,889 + +1.5 4,448,890 - +0.1 4,448,890 - +2.6 4,448,890 - -1.0 4,448,890 - +0.6 4,448,890 - +0.6 4,448,890 - -1.0 4,448,890 - +1.5 4,448,890 - -0.6 4,448,890 - -0.8 4,448,890 - +0.6 4,448,890 - +0.4 4,448,890 - -0.2 4,448,969 + +0.8 4,448,969 + +0.0 4,448,995 + +1.2 4,448,995 + -0.8 4,448,995 + -2.9 4,448,995 + -3.3 4,448,995 + +0.7 4,448,995 + -1.6 4,448,995 + -1.9 4,448,996 - +0.7 4,448,996 - -1.2 4,448,996 - -0.1 4,448,996 - -1.3 4,449,019 + +0.6 4,449,019 + -1.0 4,449,019 + -0.8 4,449,020 - -1.8 4,449,027 - -0.6 4,449,027 - -2.3 4,449,027 - -0.2 4,449,027 - +0.1 4,449,035 - +0.4 4,449,100 + Xcc-8004.4667.1 0.13 -0.0 4,449,100 + Xcc-8004.4667.1 0.13 -2.1 4,449,100 + Xcc-8004.4667.1 0.13 +1.7 4,449,101 - Xcc-8004.4667.1 0.14 -0.1 4,449,101 - Xcc-8004.4667.1 0.14 -0.7 4,449,129 - Xcc-8004.4667.1 0.21 +0.1 4,449,129 - Xcc-8004.4667.1 0.21 +0.8 4,449,313 + Xcc-8004.4667.1 0.69 +1.1 4,449,323 - Xcc-8004.4667.1 0.71 -2.5 4,449,340 + Xcc-8004.4667.1 0.76 +0.0 4,449,340 + Xcc-8004.4667.1 0.76 +0.1 4,449,341 - Xcc-8004.4667.1 0.76 -1.6 4,449,355 + Xcc-8004.4667.1 0.80 -1.4 4,449,355 + Xcc-8004.4667.1 0.80 +0.8 4,449,355 + Xcc-8004.4667.1 0.80 +0.7 4,449,356 - Xcc-8004.4667.1 0.80 -1.2 4,449,356 - Xcc-8004.4667.1 0.80 -0.8 4,449,356 - Xcc-8004.4667.1 0.80 -0.3 4,449,370 + Xcc-8004.4667.1 0.84 -0.8 4,449,370 + Xcc-8004.4667.1 0.84 +0.5 4,449,371 - Xcc-8004.4667.1 0.84 +1.2 4,449,395 + -2.0 4,449,395 + -1.5 4,449,456 + Xcc-8004.4668.1 0.13 -0.5 4,449,575 - Xcc-8004.4668.1 0.65 -1.0 4,449,575 - Xcc-8004.4668.1 0.65 -0.0 4,449,606 - Xcc-8004.4668.1 0.78 +0.3 4,449,606 - Xcc-8004.4668.1 0.78 +0.2 4,449,735 + -2.0 4,449,736 - -0.4 4,449,885 + Xcc-8004.4669.1 0.18 -1.4 4,449,885 + Xcc-8004.4669.1 0.18 -2.7 4,449,885 + Xcc-8004.4669.1 0.18 -2.0 4,449,886 - Xcc-8004.4669.1 0.18 -3.1 4,449,886 - Xcc-8004.4669.1 0.18 -0.6 4,449,886 - Xcc-8004.4669.1 0.18 -1.6 4,449,886 - Xcc-8004.4669.1 0.18 -1.9 4,449,891 + Xcc-8004.4669.1 0.19 -1.2 4,449,892 - Xcc-8004.4669.1 0.19 -1.2 4,449,892 - Xcc-8004.4669.1 0.19 -1.3 4,449,949 - Xcc-8004.4669.1 0.23 -0.3 4,449,949 - Xcc-8004.4669.1 0.23 -2.8 4,449,949 - Xcc-8004.4669.1 0.23 -2.4 4,449,987 + Xcc-8004.4669.1 0.26 -0.2 4,449,988 - Xcc-8004.4669.1 0.26 -0.4 4,449,988 - Xcc-8004.4669.1 0.26 -1.0 4,450,090 - Xcc-8004.4669.1 0.34 -3.1 4,450,090 - Xcc-8004.4669.1 0.34 -1.2 4,450,090 - Xcc-8004.4669.1 0.34 -0.1 4,450,090 - Xcc-8004.4669.1 0.34 -2.0 4,450,227 + Xcc-8004.4669.1 0.45 -1.7 4,450,227 + Xcc-8004.4669.1 0.45 -1.8 4,450,227 + Xcc-8004.4669.1 0.45 -0.5 4,450,227 + Xcc-8004.4669.1 0.45 -0.9 4,450,227 + Xcc-8004.4669.1 0.45 -3.1 4,450,227 + Xcc-8004.4669.1 0.45 -2.4 4,450,228 - Xcc-8004.4669.1 0.45 -1.8 4,450,228 - Xcc-8004.4669.1 0.45 -1.0 4,450,228 - Xcc-8004.4669.1 0.45 -0.5 4,450,228 - Xcc-8004.4669.1 0.45 -1.5 4,450,532 + Xcc-8004.4669.1 0.68 -2.1 4,450,532 + Xcc-8004.4669.1 0.68 -0.0 4,450,532 + Xcc-8004.4669.1 0.68 -1.0 4,450,533 - Xcc-8004.4669.1 0.69 -1.8 4,450,533 - Xcc-8004.4669.1 0.69 -1.5 4,450,533 - Xcc-8004.4669.1 0.69 -2.2 4,450,686 + Xcc-8004.4669.1 0.80 -4.9 4,450,686 + Xcc-8004.4669.1 0.80 -0.3 4,450,687 - Xcc-8004.4669.1 0.81 -0.5 4,450,687 - Xcc-8004.4669.1 0.81 -1.1 4,450,936 + -0.3 4,450,936 + -3.7 4,450,936 + -0.8 4,450,936 + -3.0 4,450,959 + -0.3 4,450,959 + -1.7 4,450,959 + -0.1 4,450,959 + -0.8 4,450,960 - +0.9 4,450,960 - +0.6 4,450,960 - +1.3 4,450,962 + -1.1 4,450,962 + -2.3 4,450,962 + -2.0 4,450,963 - -0.6 4,450,963 - +1.7 4,450,963 - -0.1 4,451,072 - -0.5 4,451,119 + -3.0 4,451,119 + -0.8 4,451,119 + +0.6 4,451,119 + -0.1 4,451,120 - +0.5 4,451,180 + -1.1 4,451,181 - +1.6 4,451,358 + +1.9 4,451,358 + -0.7 4,451,358 + -0.3 4,451,359 - -1.4 4,451,369 + +0.9 4,451,370 - -0.0 4,451,395 + +0.1 4,451,395 + -2.0 4,451,395 + -0.3 4,451,395 + -0.3 4,451,395 + +1.6 4,451,396 - +0.9 4,451,396 - +0.6 4,451,566 + Xcc-8004.4671.1 0.34 -0.5 4,451,566 + Xcc-8004.4671.1 0.34 -1.4 4,451,567 - Xcc-8004.4671.1 0.35 +0.4 4,451,567 - Xcc-8004.4671.1 0.35 -0.4 4,451,567 - Xcc-8004.4671.1 0.35 -0.7 4,451,567 - Xcc-8004.4671.1 0.35 +0.6 4,451,570 - Xcc-8004.4671.1 0.36 -0.1 4,451,874 + Xcc-8004.4672.1 0.56 +2.4 4,451,874 + Xcc-8004.4672.1 0.56 +0.4 4,451,875 - Xcc-8004.4672.1 0.56 +0.0 4,451,875 - Xcc-8004.4672.1 0.56 -0.7 4,451,875 - Xcc-8004.4672.1 0.56 +0.2
Or see this region's nucleotide sequence