Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.401.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.400.1 and Xcc-8004.401.1 are separated by 97 nucleotidesXcc-8004.401.1 and Xcc-8004.402.1 are separated by 169 nucleotides Xcc-8004.400.1: Xcc-8004.400.1 - Transcriptional activator MetR, at 386,987 to 387,892 Xcc-8004.400.1 Xcc-8004.401.1: Xcc-8004.401.1 - FMN reductase (EC 1.5.1.29), at 387,990 to 388,583 Xcc-8004.401.1 Xcc-8004.402.1: Xcc-8004.402.1 - FIG01209770: hypothetical protein, at 388,753 to 389,772 Xcc-8004.402.1 Position (kb) 387 388 389Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 387.048 kb on + strandat 387.062 kb on - strandat 387.147 kb on + strand, within Xcc-8004.400.1at 387.147 kb on + strand, within Xcc-8004.400.1at 387.147 kb on + strand, within Xcc-8004.400.1at 387.147 kb on + strand, within Xcc-8004.400.1at 387.147 kb on + strand, within Xcc-8004.400.1at 387.147 kb on + strand, within Xcc-8004.400.1at 387.229 kb on + strand, within Xcc-8004.400.1at 387.277 kb on + strand, within Xcc-8004.400.1at 387.277 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.284 kb on - strand, within Xcc-8004.400.1at 387.351 kb on + strand, within Xcc-8004.400.1at 387.352 kb on - strand, within Xcc-8004.400.1at 387.402 kb on + strand, within Xcc-8004.400.1at 387.403 kb on - strand, within Xcc-8004.400.1at 387.438 kb on + strand, within Xcc-8004.400.1at 387.439 kb on - strand, within Xcc-8004.400.1at 387.553 kb on - strand, within Xcc-8004.400.1at 387.582 kb on + strand, within Xcc-8004.400.1at 387.703 kb on - strand, within Xcc-8004.400.1at 387.703 kb on - strand, within Xcc-8004.400.1at 387.935 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.977 kb on + strandat 387.977 kb on + strandat 387.977 kb on + strandat 387.977 kb on + strandat 387.978 kb on - strandat 387.978 kb on - strandat 387.978 kb on - strandat 387.978 kb on - strandat 387.978 kb on - strandat 387.978 kb on - strandat 388.252 kb on - strand, within Xcc-8004.401.1at 388.435 kb on - strand, within Xcc-8004.401.1at 388.435 kb on - strand, within Xcc-8004.401.1at 388.461 kb on + strand, within Xcc-8004.401.1at 388.805 kb on - strandat 388.821 kb on + strandat 388.821 kb on + strandat 388.826 kb on - strandat 389.036 kb on + strand, within Xcc-8004.402.1at 389.076 kb on + strand, within Xcc-8004.402.1at 389.110 kb on + strand, within Xcc-8004.402.1at 389.110 kb on + strand, within Xcc-8004.402.1at 389.111 kb on - strand, within Xcc-8004.402.1at 389.111 kb on - strand, within Xcc-8004.402.1at 389.235 kb on + strand, within Xcc-8004.402.1at 389.239 kb on + strand, within Xcc-8004.402.1at 389.240 kb on - strand, within Xcc-8004.402.1at 389.299 kb on + strand, within Xcc-8004.402.1at 389.299 kb on + strand, within Xcc-8004.402.1at 389.300 kb on - strand, within Xcc-8004.402.1at 389.374 kb on + strand, within Xcc-8004.402.1at 389.443 kb on + strand, within Xcc-8004.402.1at 389.543 kb on - strand, within Xcc-8004.402.1at 389.543 kb on - strand, within Xcc-8004.402.1at 389.573 kb on - strand, within Xcc-8004.402.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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387,048 + -0.0
387,062 - -2.3
387,147 + Xcc-8004.400.1 0.18 +0.6
387,147 + Xcc-8004.400.1 0.18 -0.5
387,147 + Xcc-8004.400.1 0.18 +1.3
387,147 + Xcc-8004.400.1 0.18 +0.0
387,147 + Xcc-8004.400.1 0.18 +0.8
387,147 + Xcc-8004.400.1 0.18 +0.5
387,229 + Xcc-8004.400.1 0.27 +1.1
387,277 + Xcc-8004.400.1 0.32 +0.5
387,277 + Xcc-8004.400.1 0.32 -0.1
387,279 + Xcc-8004.400.1 0.32 +0.1
387,279 + Xcc-8004.400.1 0.32 +3.5
387,279 + Xcc-8004.400.1 0.32 -0.6
387,279 + Xcc-8004.400.1 0.32 +1.3
387,279 + Xcc-8004.400.1 0.32 +0.8
387,279 + Xcc-8004.400.1 0.32 -0.8
387,279 + Xcc-8004.400.1 0.32 -0.1
387,280 - Xcc-8004.400.1 0.32 -1.3
387,280 - Xcc-8004.400.1 0.32 -1.4
387,280 - Xcc-8004.400.1 0.32 +1.4
387,280 - Xcc-8004.400.1 0.32 +0.5
387,280 - Xcc-8004.400.1 0.32 +0.3
387,280 - Xcc-8004.400.1 0.32 -2.2
387,280 - Xcc-8004.400.1 0.32 +0.1
387,280 - Xcc-8004.400.1 0.32 +1.7
387,280 - Xcc-8004.400.1 0.32 +0.6
387,284 - Xcc-8004.400.1 0.33 +1.9
387,351 + Xcc-8004.400.1 0.40 +0.6
387,352 - Xcc-8004.400.1 0.40 -1.9
387,402 + Xcc-8004.400.1 0.46 -2.6
387,403 - Xcc-8004.400.1 0.46 -0.1
387,438 + Xcc-8004.400.1 0.50 -0.9
387,439 - Xcc-8004.400.1 0.50 -0.2
387,553 - Xcc-8004.400.1 0.62 -0.1
387,582 + Xcc-8004.400.1 0.66 -0.7
387,703 - Xcc-8004.400.1 0.79 -1.7
387,703 - Xcc-8004.400.1 0.79 +2.2
387,935 + -2.6
387,956 + -0.2
387,956 + +0.9
387,956 + -2.2
387,956 + -1.8
387,956 + +0.3
387,956 + -1.1
387,956 + +1.1
387,956 + +2.8
387,956 + +1.4
387,956 + +1.2
387,956 + -0.2
387,956 + +1.1
387,956 + -2.2
387,956 + -0.6
387,957 - -0.8
387,957 - +0.8
387,957 - -2.4
387,957 - -1.8
387,957 - +1.0
387,957 - -3.1
387,957 - +0.2
387,957 - -0.4
387,977 + -0.9
387,977 + -0.2
387,977 + -0.9
387,977 + +2.9
387,978 - +0.5
387,978 - +0.9
387,978 - -1.7
387,978 - -0.3
387,978 - -0.1
387,978 - -1.1
388,252 - Xcc-8004.401.1 0.44 +0.8
388,435 - Xcc-8004.401.1 0.75 -2.9
388,435 - Xcc-8004.401.1 0.75 +0.4
388,461 + Xcc-8004.401.1 0.79 -1.2
388,805 - +0.4
388,821 + -2.1
388,821 + -2.3
388,826 - -0.2
389,036 + Xcc-8004.402.1 0.28 -0.4
389,076 + Xcc-8004.402.1 0.32 -0.9
389,110 + Xcc-8004.402.1 0.35 -2.5
389,110 + Xcc-8004.402.1 0.35 +2.4
389,111 - Xcc-8004.402.1 0.35 +0.7
389,111 - Xcc-8004.402.1 0.35 +0.4
389,235 + Xcc-8004.402.1 0.47 -0.7
389,239 + Xcc-8004.402.1 0.48 +0.2
389,240 - Xcc-8004.402.1 0.48 +0.2
389,299 + Xcc-8004.402.1 0.54 -2.5
389,299 + Xcc-8004.402.1 0.54 +0.3
389,300 - Xcc-8004.402.1 0.54 -2.0
389,374 + Xcc-8004.402.1 0.61 +0.6
389,443 + Xcc-8004.402.1 0.68 +1.2
389,543 - Xcc-8004.402.1 0.77 -1.8
389,543 - Xcc-8004.402.1 0.77 +0.0
389,573 - Xcc-8004.402.1 0.80 +0.1

Or see this region's nucleotide sequence