Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3921.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3920.1 and Xcc-8004.3921.1 are separated by 143 nucleotidesXcc-8004.3921.1 and Xcc-8004.3922.1 are separated by 9 nucleotidesXcc-8004.3922.1 and Xcc-8004.3923.1 are separated by 24 nucleotides Xcc-8004.3920.1: Xcc-8004.3920.1 - FIG01211211: hypothetical protein, at 3,794,421 to 3,795,404 Xcc-8004.3920.1 Xcc-8004.3921.1: Xcc-8004.3921.1 - Alpha-1,2-mannosidase, at 3,795,548 to 3,797,896 Xcc-8004.3921.1 Xcc-8004.3922.1: Xcc-8004.3922.1 - FIG01210602: hypothetical protein, at 3,797,906 to 3,798,781 Xcc-8004.3922.1 Xcc-8004.3923.1: Xcc-8004.3923.1 - Short-chain dehydrogenase/reductase SDR, at 3,798,806 to 3,799,708 Xcc-8004.3923.1 Position (kb) 3795 3796 3797 3798Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3794.827 kb on + strand, within Xcc-8004.3920.1at 3794.883 kb on + strand, within Xcc-8004.3920.1at 3794.883 kb on + strand, within Xcc-8004.3920.1at 3794.884 kb on - strand, within Xcc-8004.3920.1at 3794.884 kb on - strand, within Xcc-8004.3920.1at 3794.927 kb on - strand, within Xcc-8004.3920.1at 3794.927 kb on - strand, within Xcc-8004.3920.1at 3794.927 kb on - strand, within Xcc-8004.3920.1at 3794.927 kb on - strand, within Xcc-8004.3920.1at 3794.927 kb on - strand, within Xcc-8004.3920.1at 3794.974 kb on - strand, within Xcc-8004.3920.1at 3794.974 kb on - strand, within Xcc-8004.3920.1at 3794.979 kb on + strand, within Xcc-8004.3920.1at 3794.980 kb on - strand, within Xcc-8004.3920.1at 3794.980 kb on - strand, within Xcc-8004.3920.1at 3795.018 kb on + strand, within Xcc-8004.3920.1at 3795.018 kb on + strand, within Xcc-8004.3920.1at 3795.018 kb on + strand, within Xcc-8004.3920.1at 3795.018 kb on + strand, within Xcc-8004.3920.1at 3795.019 kb on - strand, within Xcc-8004.3920.1at 3795.019 kb on - strand, within Xcc-8004.3920.1at 3795.019 kb on - strand, within Xcc-8004.3920.1at 3795.110 kb on + strand, within Xcc-8004.3920.1at 3795.111 kb on - strand, within Xcc-8004.3920.1at 3795.208 kb on - strand, within Xcc-8004.3920.1at 3795.208 kb on - strand, within Xcc-8004.3920.1at 3795.697 kb on + strandat 3795.697 kb on + strandat 3795.697 kb on + strandat 3795.697 kb on + strandat 3795.697 kb on + strandat 3795.697 kb on + strandat 3795.698 kb on - strandat 3795.698 kb on - strandat 3795.698 kb on - strandat 3795.776 kb on + strandat 3795.777 kb on - strandat 3795.803 kb on - strand, within Xcc-8004.3921.1at 3795.833 kb on - strand, within Xcc-8004.3921.1at 3795.871 kb on + strand, within Xcc-8004.3921.1at 3795.871 kb on + strand, within Xcc-8004.3921.1at 3795.941 kb on + strand, within Xcc-8004.3921.1at 3795.986 kb on + strand, within Xcc-8004.3921.1at 3795.986 kb on + strand, within Xcc-8004.3921.1at 3795.987 kb on - strand, within Xcc-8004.3921.1at 3795.989 kb on + strand, within Xcc-8004.3921.1at 3795.990 kb on - strand, within Xcc-8004.3921.1at 3796.118 kb on + strand, within Xcc-8004.3921.1at 3796.119 kb on - strand, within Xcc-8004.3921.1at 3796.119 kb on - strand, within Xcc-8004.3921.1at 3796.223 kb on + strand, within Xcc-8004.3921.1at 3796.224 kb on - strand, within Xcc-8004.3921.1at 3796.224 kb on - strand, within Xcc-8004.3921.1at 3796.292 kb on + strand, within Xcc-8004.3921.1at 3796.293 kb on - strand, within Xcc-8004.3921.1at 3796.293 kb on - strand, within Xcc-8004.3921.1at 3796.572 kb on - strand, within Xcc-8004.3921.1at 3796.583 kb on + strand, within Xcc-8004.3921.1at 3796.583 kb on + strand, within Xcc-8004.3921.1at 3796.584 kb on - strand, within Xcc-8004.3921.1at 3796.679 kb on + strand, within Xcc-8004.3921.1at 3796.679 kb on + strand, within Xcc-8004.3921.1at 3796.680 kb on - strand, within Xcc-8004.3921.1at 3796.706 kb on + strand, within Xcc-8004.3921.1at 3796.707 kb on - strand, within Xcc-8004.3921.1at 3796.889 kb on + strand, within Xcc-8004.3921.1at 3796.889 kb on + strand, within Xcc-8004.3921.1at 3796.889 kb on + strand, within Xcc-8004.3921.1at 3796.889 kb on + strand, within Xcc-8004.3921.1at 3796.890 kb on - strand, within Xcc-8004.3921.1at 3796.955 kb on + strand, within Xcc-8004.3921.1at 3796.955 kb on + strand, within Xcc-8004.3921.1at 3796.956 kb on - strand, within Xcc-8004.3921.1at 3796.997 kb on + strand, within Xcc-8004.3921.1at 3797.046 kb on - strand, within Xcc-8004.3921.1at 3797.166 kb on - strand, within Xcc-8004.3921.1at 3797.166 kb on - strand, within Xcc-8004.3921.1at 3797.241 kb on - strand, within Xcc-8004.3921.1at 3797.264 kb on + strand, within Xcc-8004.3921.1at 3797.264 kb on + strand, within Xcc-8004.3921.1at 3797.265 kb on - strand, within Xcc-8004.3921.1at 3797.273 kb on + strand, within Xcc-8004.3921.1at 3797.273 kb on + strand, within Xcc-8004.3921.1at 3797.273 kb on + strand, within Xcc-8004.3921.1at 3797.273 kb on + strand, within Xcc-8004.3921.1at 3797.273 kb on + strand, within Xcc-8004.3921.1at 3797.274 kb on - strand, within Xcc-8004.3921.1at 3797.274 kb on - strand, within Xcc-8004.3921.1at 3797.274 kb on - strand, within Xcc-8004.3921.1at 3797.274 kb on - strand, within Xcc-8004.3921.1at 3797.460 kb on - strand, within Xcc-8004.3921.1at 3797.460 kb on - strand, within Xcc-8004.3921.1at 3797.460 kb on - strand, within Xcc-8004.3921.1at 3797.465 kb on + strand, within Xcc-8004.3921.1at 3797.465 kb on + strand, within Xcc-8004.3921.1at 3797.466 kb on - strand, within Xcc-8004.3921.1at 3797.466 kb on - strand, within Xcc-8004.3921.1at 3797.510 kb on - strand, within Xcc-8004.3921.1at 3797.510 kb on - strand, within Xcc-8004.3921.1at 3797.522 kb on + strand, within Xcc-8004.3921.1at 3797.523 kb on - strand, within Xcc-8004.3921.1at 3797.582 kb on + strand, within Xcc-8004.3921.1at 3797.582 kb on + strand, within Xcc-8004.3921.1at 3797.583 kb on - strand, within Xcc-8004.3921.1at 3797.583 kb on - strand, within Xcc-8004.3921.1at 3797.583 kb on - strand, within Xcc-8004.3921.1at 3797.606 kb on + strand, within Xcc-8004.3921.1at 3797.633 kb on + strand, within Xcc-8004.3921.1at 3797.633 kb on + strand, within Xcc-8004.3921.1at 3797.633 kb on + strand, within Xcc-8004.3921.1at 3797.633 kb on + strand, within Xcc-8004.3921.1at 3797.634 kb on - strand, within Xcc-8004.3921.1at 3797.634 kb on - strand, within Xcc-8004.3921.1at 3797.634 kb on - strand, within Xcc-8004.3921.1at 3797.634 kb on - strand, within Xcc-8004.3921.1at 3797.634 kb on - strand, within Xcc-8004.3921.1at 3797.634 kb on - strand, within Xcc-8004.3921.1at 3797.634 kb on - strand, within Xcc-8004.3921.1at 3797.634 kb on - strand, within Xcc-8004.3921.1at 3797.634 kb on - strand, within Xcc-8004.3921.1at 3797.732 kb on + strandat 3797.733 kb on - strandat 3797.877 kb on - strandat 3798.473 kb on - strand, within Xcc-8004.3922.1at 3798.531 kb on + strand, within Xcc-8004.3922.1at 3798.531 kb on + strand, within Xcc-8004.3922.1at 3798.531 kb on + strand, within Xcc-8004.3922.1at 3798.532 kb on - strand, within Xcc-8004.3922.1at 3798.532 kb on - strand, within Xcc-8004.3922.1at 3798.534 kb on + strand, within Xcc-8004.3922.1at 3798.535 kb on - strand, within Xcc-8004.3922.1at 3798.535 kb on - strand, within Xcc-8004.3922.1at 3798.660 kb on + strand, within Xcc-8004.3922.1at 3798.660 kb on + strand, within Xcc-8004.3922.1at 3798.661 kb on - strand, within Xcc-8004.3922.1at 3798.661 kb on - strand, within Xcc-8004.3922.1at 3798.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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3,794,827 + Xcc-8004.3920.1 0.41 +0.3
3,794,883 + Xcc-8004.3920.1 0.47 +0.7
3,794,883 + Xcc-8004.3920.1 0.47 +1.7
3,794,884 - Xcc-8004.3920.1 0.47 +0.7
3,794,884 - Xcc-8004.3920.1 0.47 +0.1
3,794,927 - Xcc-8004.3920.1 0.51 -0.3
3,794,927 - Xcc-8004.3920.1 0.51 -1.1
3,794,927 - Xcc-8004.3920.1 0.51 -1.5
3,794,927 - Xcc-8004.3920.1 0.51 +1.2
3,794,927 - Xcc-8004.3920.1 0.51 +1.0
3,794,974 - Xcc-8004.3920.1 0.56 -1.8
3,794,974 - Xcc-8004.3920.1 0.56 +0.6
3,794,979 + Xcc-8004.3920.1 0.57 -0.6
3,794,980 - Xcc-8004.3920.1 0.57 -0.3
3,794,980 - Xcc-8004.3920.1 0.57 -1.7
3,795,018 + Xcc-8004.3920.1 0.61 +0.7
3,795,018 + Xcc-8004.3920.1 0.61 +0.2
3,795,018 + Xcc-8004.3920.1 0.61 -0.1
3,795,018 + Xcc-8004.3920.1 0.61 +0.6
3,795,019 - Xcc-8004.3920.1 0.61 +0.3
3,795,019 - Xcc-8004.3920.1 0.61 -0.8
3,795,019 - Xcc-8004.3920.1 0.61 -0.5
3,795,110 + Xcc-8004.3920.1 0.70 -2.7
3,795,111 - Xcc-8004.3920.1 0.70 -0.6
3,795,208 - Xcc-8004.3920.1 0.80 +0.9
3,795,208 - Xcc-8004.3920.1 0.80 -1.2
3,795,697 + +0.7
3,795,697 + -2.7
3,795,697 + +0.1
3,795,697 + -2.0
3,795,697 + +0.6
3,795,697 + -1.7
3,795,698 - -0.7
3,795,698 - -1.3
3,795,698 - -0.5
3,795,776 + +0.3
3,795,777 - +1.7
3,795,803 - Xcc-8004.3921.1 0.11 -0.2
3,795,833 - Xcc-8004.3921.1 0.12 -0.1
3,795,871 + Xcc-8004.3921.1 0.14 +0.6
3,795,871 + Xcc-8004.3921.1 0.14 -0.4
3,795,941 + Xcc-8004.3921.1 0.17 +0.9
3,795,986 + Xcc-8004.3921.1 0.19 -1.4
3,795,986 + Xcc-8004.3921.1 0.19 -0.5
3,795,987 - Xcc-8004.3921.1 0.19 +0.1
3,795,989 + Xcc-8004.3921.1 0.19 +0.7
3,795,990 - Xcc-8004.3921.1 0.19 +0.5
3,796,118 + Xcc-8004.3921.1 0.24 -1.0
3,796,119 - Xcc-8004.3921.1 0.24 +0.2
3,796,119 - Xcc-8004.3921.1 0.24 -2.6
3,796,223 + Xcc-8004.3921.1 0.29 -3.7
3,796,224 - Xcc-8004.3921.1 0.29 -0.4
3,796,224 - Xcc-8004.3921.1 0.29 -0.9
3,796,292 + Xcc-8004.3921.1 0.32 +0.4
3,796,293 - Xcc-8004.3921.1 0.32 +0.3
3,796,293 - Xcc-8004.3921.1 0.32 +1.2
3,796,572 - Xcc-8004.3921.1 0.44 -0.3
3,796,583 + Xcc-8004.3921.1 0.44 +0.0
3,796,583 + Xcc-8004.3921.1 0.44 +0.6
3,796,584 - Xcc-8004.3921.1 0.44 +2.2
3,796,679 + Xcc-8004.3921.1 0.48 +1.6
3,796,679 + Xcc-8004.3921.1 0.48 +0.1
3,796,680 - Xcc-8004.3921.1 0.48 -0.2
3,796,706 + Xcc-8004.3921.1 0.49 +1.0
3,796,707 - Xcc-8004.3921.1 0.49 -0.6
3,796,889 + Xcc-8004.3921.1 0.57 -1.6
3,796,889 + Xcc-8004.3921.1 0.57 +0.7
3,796,889 + Xcc-8004.3921.1 0.57 -0.9
3,796,889 + Xcc-8004.3921.1 0.57 -0.3
3,796,890 - Xcc-8004.3921.1 0.57 -0.5
3,796,955 + Xcc-8004.3921.1 0.60 -2.9
3,796,955 + Xcc-8004.3921.1 0.60 +0.5
3,796,956 - Xcc-8004.3921.1 0.60 +1.8
3,796,997 + Xcc-8004.3921.1 0.62 +1.6
3,797,046 - Xcc-8004.3921.1 0.64 +0.5
3,797,166 - Xcc-8004.3921.1 0.69 +1.5
3,797,166 - Xcc-8004.3921.1 0.69 +1.0
3,797,241 - Xcc-8004.3921.1 0.72 +0.6
3,797,264 + Xcc-8004.3921.1 0.73 +0.7
3,797,264 + Xcc-8004.3921.1 0.73 -1.7
3,797,265 - Xcc-8004.3921.1 0.73 +0.0
3,797,273 + Xcc-8004.3921.1 0.73 -1.0
3,797,273 + Xcc-8004.3921.1 0.73 -1.1
3,797,273 + Xcc-8004.3921.1 0.73 -0.2
3,797,273 + Xcc-8004.3921.1 0.73 -1.1
3,797,273 + Xcc-8004.3921.1 0.73 +0.8
3,797,274 - Xcc-8004.3921.1 0.73 +0.9
3,797,274 - Xcc-8004.3921.1 0.73 +0.6
3,797,274 - Xcc-8004.3921.1 0.73 +0.5
3,797,274 - Xcc-8004.3921.1 0.73 -0.3
3,797,460 - Xcc-8004.3921.1 0.81 +0.6
3,797,460 - Xcc-8004.3921.1 0.81 -1.5
3,797,460 - Xcc-8004.3921.1 0.81 -1.4
3,797,465 + Xcc-8004.3921.1 0.82 -0.4
3,797,465 + Xcc-8004.3921.1 0.82 +1.3
3,797,466 - Xcc-8004.3921.1 0.82 +0.0
3,797,466 - Xcc-8004.3921.1 0.82 +1.5
3,797,510 - Xcc-8004.3921.1 0.84 +2.1
3,797,510 - Xcc-8004.3921.1 0.84 +0.0
3,797,522 + Xcc-8004.3921.1 0.84 +0.8
3,797,523 - Xcc-8004.3921.1 0.84 +0.5
3,797,582 + Xcc-8004.3921.1 0.87 -2.2
3,797,582 + Xcc-8004.3921.1 0.87 +0.0
3,797,583 - Xcc-8004.3921.1 0.87 -1.6
3,797,583 - Xcc-8004.3921.1 0.87 +0.9
3,797,583 - Xcc-8004.3921.1 0.87 -2.2
3,797,606 + Xcc-8004.3921.1 0.88 -1.2
3,797,633 + Xcc-8004.3921.1 0.89 +1.7
3,797,633 + Xcc-8004.3921.1 0.89 +0.8
3,797,633 + Xcc-8004.3921.1 0.89 +0.1
3,797,633 + Xcc-8004.3921.1 0.89 -0.8
3,797,634 - Xcc-8004.3921.1 0.89 +1.5
3,797,634 - Xcc-8004.3921.1 0.89 +0.5
3,797,634 - Xcc-8004.3921.1 0.89 +0.7
3,797,634 - Xcc-8004.3921.1 0.89 +0.9
3,797,634 - Xcc-8004.3921.1 0.89 -1.0
3,797,634 - Xcc-8004.3921.1 0.89 +0.2
3,797,634 - Xcc-8004.3921.1 0.89 -0.3
3,797,634 - Xcc-8004.3921.1 0.89 -0.6
3,797,634 - Xcc-8004.3921.1 0.89 +1.5
3,797,732 + +0.5
3,797,733 - +0.7
3,797,877 - +0.4
3,798,473 - Xcc-8004.3922.1 0.65 +0.5
3,798,531 + Xcc-8004.3922.1 0.71 +0.3
3,798,531 + Xcc-8004.3922.1 0.71 -1.0
3,798,531 + Xcc-8004.3922.1 0.71 -0.3
3,798,532 - Xcc-8004.3922.1 0.71 +0.0
3,798,532 - Xcc-8004.3922.1 0.71 -1.6
3,798,534 + Xcc-8004.3922.1 0.72 +0.2
3,798,535 - Xcc-8004.3922.1 0.72 -1.6
3,798,535 - Xcc-8004.3922.1 0.72 +1.6
3,798,660 + Xcc-8004.3922.1 0.86 +1.3
3,798,660 + Xcc-8004.3922.1 0.86 +0.4
3,798,661 - Xcc-8004.3922.1 0.86 +2.3
3,798,661 - Xcc-8004.3922.1 0.86 +0.1
3,798,828 - +1.6

Or see this region's nucleotide sequence