Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3916.1 and Xcc-8004.3917.1 are separated by 263 nucleotides Xcc-8004.3917.1 and Xcc-8004.3918.1 overlap by 4 nucleotides
Xcc-8004.3916.1: Xcc-8004.3916.1 - EAL domain protein, at 3,790,420 to 3,791,166
Xcc-8004.3916.1
Xcc-8004.3917.1: Xcc-8004.3917.1 - Mlr4646 protein, at 3,791,430 to 3,791,732
Xcc-8004.3917.1
Xcc-8004.3918.1: Xcc-8004.3918.1 - Thioredoxin reductase (EC 1.8.1.9), at 3,791,729 to 3,793,477
Xcc-8004.3918.1
Position (kb) 3791
3792 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3790.479 kb on + strand at 3790.480 kb on - strand at 3790.480 kb on - strand at 3790.509 kb on - strand, within Xcc-8004.3916.1 at 3790.525 kb on + strand, within Xcc-8004.3916.1 at 3790.525 kb on + strand, within Xcc-8004.3916.1 at 3790.525 kb on + strand, within Xcc-8004.3916.1 at 3790.525 kb on + strand, within Xcc-8004.3916.1 at 3790.526 kb on - strand, within Xcc-8004.3916.1 at 3790.607 kb on - strand, within Xcc-8004.3916.1 at 3790.705 kb on + strand, within Xcc-8004.3916.1 at 3790.705 kb on + strand, within Xcc-8004.3916.1 at 3790.705 kb on + strand, within Xcc-8004.3916.1 at 3790.705 kb on + strand, within Xcc-8004.3916.1 at 3790.706 kb on - strand, within Xcc-8004.3916.1 at 3790.706 kb on - strand, within Xcc-8004.3916.1 at 3790.706 kb on - strand, within Xcc-8004.3916.1 at 3790.753 kb on + strand, within Xcc-8004.3916.1 at 3790.753 kb on + strand, within Xcc-8004.3916.1 at 3790.843 kb on + strand, within Xcc-8004.3916.1 at 3790.891 kb on + strand, within Xcc-8004.3916.1 at 3790.892 kb on - strand, within Xcc-8004.3916.1 at 3790.892 kb on - strand, within Xcc-8004.3916.1 at 3791.087 kb on + strand, within Xcc-8004.3916.1 at 3791.088 kb on - strand, within Xcc-8004.3916.1 at 3791.088 kb on - strand, within Xcc-8004.3916.1 at 3791.291 kb on - strand at 3791.437 kb on + strand at 3791.437 kb on + strand at 3791.438 kb on - strand at 3791.438 kb on - strand at 3791.500 kb on + strand, within Xcc-8004.3917.1 at 3791.500 kb on + strand, within Xcc-8004.3917.1 at 3791.530 kb on + strand, within Xcc-8004.3917.1 at 3791.530 kb on + strand, within Xcc-8004.3917.1 at 3791.530 kb on + strand, within Xcc-8004.3917.1 at 3791.531 kb on - strand, within Xcc-8004.3917.1 at 3791.531 kb on - strand, within Xcc-8004.3917.1 at 3791.640 kb on + strand, within Xcc-8004.3917.1 at 3791.640 kb on + strand, within Xcc-8004.3917.1 at 3792.192 kb on + strand, within Xcc-8004.3918.1 at 3792.192 kb on + strand, within Xcc-8004.3918.1 at 3792.193 kb on - strand, within Xcc-8004.3918.1 at 3792.193 kb on - strand, within Xcc-8004.3918.1 at 3792.354 kb on + strand, within Xcc-8004.3918.1 at 3792.355 kb on - strand, within Xcc-8004.3918.1 at 3792.355 kb on - strand, within Xcc-8004.3918.1 at 3792.355 kb on - strand, within Xcc-8004.3918.1 at 3792.561 kb on + strand, within Xcc-8004.3918.1 at 3792.561 kb on + strand, within Xcc-8004.3918.1 at 3792.562 kb on - strand, within Xcc-8004.3918.1 at 3792.612 kb on + strand, within Xcc-8004.3918.1 at 3792.612 kb on + strand, within Xcc-8004.3918.1 at 3792.612 kb on + strand, within Xcc-8004.3918.1 at 3792.612 kb on + strand, within Xcc-8004.3918.1 at 3792.699 kb on + strand, within Xcc-8004.3918.1 at 3792.700 kb on - strand, within Xcc-8004.3918.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 3,790,479 + -0.9 3,790,480 - +1.2 3,790,480 - +0.2 3,790,509 - Xcc-8004.3916.1 0.12 -0.4 3,790,525 + Xcc-8004.3916.1 0.14 +0.1 3,790,525 + Xcc-8004.3916.1 0.14 -2.4 3,790,525 + Xcc-8004.3916.1 0.14 -0.6 3,790,525 + Xcc-8004.3916.1 0.14 +0.4 3,790,526 - Xcc-8004.3916.1 0.14 -1.3 3,790,607 - Xcc-8004.3916.1 0.25 +0.9 3,790,705 + Xcc-8004.3916.1 0.38 +0.9 3,790,705 + Xcc-8004.3916.1 0.38 -2.5 3,790,705 + Xcc-8004.3916.1 0.38 -0.2 3,790,705 + Xcc-8004.3916.1 0.38 +1.7 3,790,706 - Xcc-8004.3916.1 0.38 -0.3 3,790,706 - Xcc-8004.3916.1 0.38 -0.9 3,790,706 - Xcc-8004.3916.1 0.38 +0.5 3,790,753 + Xcc-8004.3916.1 0.45 +0.8 3,790,753 + Xcc-8004.3916.1 0.45 +0.3 3,790,843 + Xcc-8004.3916.1 0.57 -1.5 3,790,891 + Xcc-8004.3916.1 0.63 -0.3 3,790,892 - Xcc-8004.3916.1 0.63 +0.3 3,790,892 - Xcc-8004.3916.1 0.63 -1.3 3,791,087 + Xcc-8004.3916.1 0.89 -3.1 3,791,088 - Xcc-8004.3916.1 0.89 +0.1 3,791,088 - Xcc-8004.3916.1 0.89 -3.7 3,791,291 - +1.5 3,791,437 + -1.2 3,791,437 + +0.9 3,791,438 - +0.4 3,791,438 - +1.4 3,791,500 + Xcc-8004.3917.1 0.23 -1.2 3,791,500 + Xcc-8004.3917.1 0.23 +0.5 3,791,530 + Xcc-8004.3917.1 0.33 -1.6 3,791,530 + Xcc-8004.3917.1 0.33 -3.8 3,791,530 + Xcc-8004.3917.1 0.33 +0.2 3,791,531 - Xcc-8004.3917.1 0.33 +0.3 3,791,531 - Xcc-8004.3917.1 0.33 -1.1 3,791,640 + Xcc-8004.3917.1 0.69 +1.9 3,791,640 + Xcc-8004.3917.1 0.69 -2.1 3,792,192 + Xcc-8004.3918.1 0.26 +1.6 3,792,192 + Xcc-8004.3918.1 0.26 -0.2 3,792,193 - Xcc-8004.3918.1 0.27 +0.7 3,792,193 - Xcc-8004.3918.1 0.27 +0.8 3,792,354 + Xcc-8004.3918.1 0.36 -0.3 3,792,355 - Xcc-8004.3918.1 0.36 -2.9 3,792,355 - Xcc-8004.3918.1 0.36 +0.9 3,792,355 - Xcc-8004.3918.1 0.36 +0.4 3,792,561 + Xcc-8004.3918.1 0.48 -3.0 3,792,561 + Xcc-8004.3918.1 0.48 -0.3 3,792,562 - Xcc-8004.3918.1 0.48 -2.0 3,792,612 + Xcc-8004.3918.1 0.50 -0.6 3,792,612 + Xcc-8004.3918.1 0.50 -0.1 3,792,612 + Xcc-8004.3918.1 0.50 -0.2 3,792,612 + Xcc-8004.3918.1 0.50 -2.2 3,792,699 + Xcc-8004.3918.1 0.55 +0.4 3,792,700 - Xcc-8004.3918.1 0.56 +0.8
Or see this region's nucleotide sequence