Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3759.1

Experiment: R2A control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3757.1 and Xcc-8004.3759.1 are separated by 260 nucleotidesXcc-8004.3759.1 and Xcc-8004.3760.1 overlap by 67 nucleotides Xcc-8004.3757.1: Xcc-8004.3757.1 - Mobile element protein, at 3,628,781 to 3,629,743 Xcc-8004.3757.1 Xcc-8004.3759.1: Xcc-8004.3759.1 - hypothetical protein, at 3,630,004 to 3,630,723 Xcc-8004.3759.1 Xcc-8004.3760.1: Xcc-8004.3760.1 - DNA mismatch repair protein MutS, at 3,630,657 to 3,633,278 Xcc-8004.3760.1 Position (kb) 3630 3631Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3629.110 kb on - strand, within Xcc-8004.3757.1at 3629.110 kb on - strand, within Xcc-8004.3757.1at 3629.110 kb on - strand, within Xcc-8004.3757.1at 3629.110 kb on - strand, within Xcc-8004.3757.1at 3629.948 kb on + strandat 3629.949 kb on - strandat 3629.985 kb on - strandat 3629.985 kb on - strandat 3630.077 kb on + strand, within Xcc-8004.3759.1at 3630.098 kb on + strand, within Xcc-8004.3759.1at 3630.099 kb on - strand, within Xcc-8004.3759.1at 3630.101 kb on + strand, within Xcc-8004.3759.1at 3630.102 kb on - strand, within Xcc-8004.3759.1at 3630.123 kb on - strand, within Xcc-8004.3759.1at 3630.375 kb on - strand, within Xcc-8004.3759.1at 3630.793 kb on - strandat 3630.910 kb on - strandat 3630.910 kb on - strandat 3630.910 kb on - strandat 3630.918 kb on + strandat 3630.918 kb on + strandat 3630.918 kb on + strandat 3630.919 kb on - strandat 3631.216 kb on + strand, within Xcc-8004.3760.1at 3631.216 kb on + strand, within Xcc-8004.3760.1at 3631.216 kb on + strand, within Xcc-8004.3760.1at 3631.217 kb on - strand, within Xcc-8004.3760.1at 3631.217 kb on - strand, within Xcc-8004.3760.1at 3631.217 kb on - strand, within Xcc-8004.3760.1at 3631.410 kb on + strand, within Xcc-8004.3760.1at 3631.410 kb on + strand, within Xcc-8004.3760.1at 3631.410 kb on + strand, within Xcc-8004.3760.1at 3631.411 kb on - strand, within Xcc-8004.3760.1at 3631.411 kb on - strand, within Xcc-8004.3760.1at 3631.411 kb on - strand, within Xcc-8004.3760.1at 3631.642 kb on + strand, within Xcc-8004.3760.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
remove
3,629,110 - Xcc-8004.3757.1 0.34 +0.5
3,629,110 - Xcc-8004.3757.1 0.34 -0.6
3,629,110 - Xcc-8004.3757.1 0.34 +0.2
3,629,110 - Xcc-8004.3757.1 0.34 -0.3
3,629,948 + -2.8
3,629,949 - -1.1
3,629,985 - +0.8
3,629,985 - +2.7
3,630,077 + Xcc-8004.3759.1 0.10 -3.3
3,630,098 + Xcc-8004.3759.1 0.13 -1.1
3,630,099 - Xcc-8004.3759.1 0.13 -2.3
3,630,101 + Xcc-8004.3759.1 0.13 +1.2
3,630,102 - Xcc-8004.3759.1 0.14 -1.4
3,630,123 - Xcc-8004.3759.1 0.17 -1.9
3,630,375 - Xcc-8004.3759.1 0.52 +1.1
3,630,793 - -0.2
3,630,910 - +1.5
3,630,910 - +1.6
3,630,910 - -0.1
3,630,918 + +0.4
3,630,918 + +0.4
3,630,918 + +1.1
3,630,919 - -0.6
3,631,216 + Xcc-8004.3760.1 0.21 +2.5
3,631,216 + Xcc-8004.3760.1 0.21 +0.8
3,631,216 + Xcc-8004.3760.1 0.21 +0.7
3,631,217 - Xcc-8004.3760.1 0.21 -0.2
3,631,217 - Xcc-8004.3760.1 0.21 +0.4
3,631,217 - Xcc-8004.3760.1 0.21 -2.0
3,631,410 + Xcc-8004.3760.1 0.29 +2.2
3,631,410 + Xcc-8004.3760.1 0.29 +0.1
3,631,410 + Xcc-8004.3760.1 0.29 +1.8
3,631,411 - Xcc-8004.3760.1 0.29 -2.1
3,631,411 - Xcc-8004.3760.1 0.29 -0.3
3,631,411 - Xcc-8004.3760.1 0.29 -1.7
3,631,642 + Xcc-8004.3760.1 0.38 -0.6

Or see this region's nucleotide sequence