Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.322.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.321.1 and Xcc-8004.322.1 are separated by 128 nucleotidesXcc-8004.322.1 and Xcc-8004.323.1 are separated by 85 nucleotidesXcc-8004.323.1 and Xcc-8004.324.1 overlap by 4 nucleotides Xcc-8004.321.1: Xcc-8004.321.1 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 311,963 to 313,126 Xcc-8004.321.1 Xcc-8004.322.1: Xcc-8004.322.1 - Predicted transcriptional regulator LiuX of leucine degradation pathway, AcrR family, at 313,255 to 313,872 Xcc-8004.322.1 Xcc-8004.323.1: Xcc-8004.323.1 - FIG01210738: hypothetical protein, at 313,958 to 314,332 Xcc-8004.323.1 Xcc-8004.324.1: Xcc-8004.324.1 - FIG01212022: hypothetical protein, at 314,329 to 314,865 Xcc-8004.324.1 Position (kb) 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 312.321 kb on + strand, within Xcc-8004.321.1at 312.321 kb on + strand, within Xcc-8004.321.1at 312.321 kb on + strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.606 kb on + strand, within Xcc-8004.321.1at 312.606 kb on + strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.665 kb on + strand, within Xcc-8004.321.1at 312.665 kb on + strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.783 kb on + strand, within Xcc-8004.321.1at 312.783 kb on + strand, within Xcc-8004.321.1at 312.852 kb on + strand, within Xcc-8004.321.1at 312.915 kb on + strand, within Xcc-8004.321.1at 312.916 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 313.042 kb on + strandat 313.043 kb on - strandat 313.043 kb on - strandat 313.197 kb on + strandat 313.197 kb on + strandat 313.198 kb on - strandat 313.223 kb on + strandat 313.234 kb on + strandat 313.234 kb on + strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.261 kb on + strandat 313.261 kb on + strandat 313.261 kb on + strandat 313.262 kb on - strandat 313.585 kb on + strand, within Xcc-8004.322.1at 313.585 kb on + strand, within Xcc-8004.322.1at 313.585 kb on + strand, within Xcc-8004.322.1at 313.585 kb on + strand, within Xcc-8004.322.1at 313.585 kb on + strand, within Xcc-8004.322.1at 313.585 kb on + strand, within Xcc-8004.322.1at 313.586 kb on - strand, within Xcc-8004.322.1at 313.586 kb on - strand, within Xcc-8004.322.1at 313.925 kb on + strandat 313.925 kb on + strandat 313.925 kb on + strandat 313.926 kb on - strandat 313.926 kb on - strandat 313.926 kb on - strandat 313.927 kb on + strandat 313.928 kb on - strandat 313.928 kb on - strandat 313.998 kb on + strand, within Xcc-8004.323.1at 314.142 kb on + strand, within Xcc-8004.323.1at 314.143 kb on - strand, within Xcc-8004.323.1at 314.143 kb on - strand, within Xcc-8004.323.1at 314.297 kb on + strandat 314.297 kb on + strandat 314.297 kb on + strandat 314.297 kb on + strandat 314.298 kb on - strandat 314.298 kb on - strandat 314.298 kb on - strandat 314.298 kb on - strandat 314.298 kb on - strandat 314.298 kb on - strandat 314.362 kb on + strandat 314.362 kb on + strandat 314.363 kb on - strandat 314.363 kb on - strandat 314.461 kb on + strand, within Xcc-8004.324.1at 314.461 kb on + strand, within Xcc-8004.324.1at 314.461 kb on + strand, within Xcc-8004.324.1at 314.461 kb on + strand, within Xcc-8004.324.1at 314.461 kb on + strand, within Xcc-8004.324.1at 314.461 kb on + strand, within Xcc-8004.324.1at 314.461 kb on + strand, within Xcc-8004.324.1at 314.462 kb on - strand, within Xcc-8004.324.1at 314.462 kb on - strand, within Xcc-8004.324.1at 314.462 kb on - strand, within Xcc-8004.324.1at 314.462 kb on - strand, within Xcc-8004.324.1at 314.462 kb on - strand, within Xcc-8004.324.1at 314.462 kb on - strand, within Xcc-8004.324.1at 314.498 kb on - strand, within Xcc-8004.324.1at 314.498 kb on - strand, within Xcc-8004.324.1at 314.542 kb on + strand, within Xcc-8004.324.1at 314.542 kb on + strand, within Xcc-8004.324.1at 314.543 kb on - strand, within Xcc-8004.324.1at 314.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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312,321 + Xcc-8004.321.1 0.31 -0.2
312,321 + Xcc-8004.321.1 0.31 +0.4
312,321 + Xcc-8004.321.1 0.31 +0.4
312,322 - Xcc-8004.321.1 0.31 +0.8
312,322 - Xcc-8004.321.1 0.31 +1.1
312,322 - Xcc-8004.321.1 0.31 -0.5
312,322 - Xcc-8004.321.1 0.31 -0.1
312,322 - Xcc-8004.321.1 0.31 +2.4
312,322 - Xcc-8004.321.1 0.31 +0.3
312,322 - Xcc-8004.321.1 0.31 -0.1
312,606 + Xcc-8004.321.1 0.55 +0.7
312,606 + Xcc-8004.321.1 0.55 -0.8
312,607 - Xcc-8004.321.1 0.55 +1.3
312,607 - Xcc-8004.321.1 0.55 +0.7
312,607 - Xcc-8004.321.1 0.55 -0.8
312,607 - Xcc-8004.321.1 0.55 +0.6
312,665 + Xcc-8004.321.1 0.60 -0.3
312,665 + Xcc-8004.321.1 0.60 -1.6
312,666 - Xcc-8004.321.1 0.60 +2.0
312,666 - Xcc-8004.321.1 0.60 +0.0
312,666 - Xcc-8004.321.1 0.60 -0.6
312,666 - Xcc-8004.321.1 0.60 +0.3
312,666 - Xcc-8004.321.1 0.60 -0.3
312,783 + Xcc-8004.321.1 0.70 -1.3
312,783 + Xcc-8004.321.1 0.70 -3.3
312,852 + Xcc-8004.321.1 0.76 +0.6
312,915 + Xcc-8004.321.1 0.82 -0.6
312,916 - Xcc-8004.321.1 0.82 +2.3
312,937 - Xcc-8004.321.1 0.84 +0.1
312,937 - Xcc-8004.321.1 0.84 -0.8
312,937 - Xcc-8004.321.1 0.84 -0.5
312,937 - Xcc-8004.321.1 0.84 +0.2
312,937 - Xcc-8004.321.1 0.84 -1.5
312,937 - Xcc-8004.321.1 0.84 -0.3
312,937 - Xcc-8004.321.1 0.84 +0.6
313,042 + -1.4
313,043 - -0.7
313,043 - -1.3
313,197 + +1.1
313,197 + -1.2
313,198 - +0.3
313,223 + -1.6
313,234 + -1.9
313,234 + +0.6
313,235 - +0.3
313,235 - -0.5
313,235 - +2.2
313,235 - -1.2
313,235 - +1.6
313,261 + +3.8
313,261 + -1.8
313,261 + -0.9
313,262 - -0.4
313,585 + Xcc-8004.322.1 0.53 -0.4
313,585 + Xcc-8004.322.1 0.53 +2.1
313,585 + Xcc-8004.322.1 0.53 -0.4
313,585 + Xcc-8004.322.1 0.53 -2.2
313,585 + Xcc-8004.322.1 0.53 -1.7
313,585 + Xcc-8004.322.1 0.53 -0.6
313,586 - Xcc-8004.322.1 0.54 -0.8
313,586 - Xcc-8004.322.1 0.54 -2.8
313,925 + -0.2
313,925 + +0.4
313,925 + -0.4
313,926 - -0.3
313,926 - +0.5
313,926 - +1.3
313,927 + +0.6
313,928 - -1.4
313,928 - -2.4
313,998 + Xcc-8004.323.1 0.11 +1.4
314,142 + Xcc-8004.323.1 0.49 +1.2
314,143 - Xcc-8004.323.1 0.49 -0.7
314,143 - Xcc-8004.323.1 0.49 +0.1
314,297 + -2.4
314,297 + -1.1
314,297 + +0.2
314,297 + +0.4
314,298 - -0.7
314,298 - +0.9
314,298 - -0.6
314,298 - -1.3
314,298 - +0.8
314,298 - -2.3
314,362 + -0.9
314,362 + -1.1
314,363 - -2.1
314,363 - -1.5
314,461 + Xcc-8004.324.1 0.25 +0.0
314,461 + Xcc-8004.324.1 0.25 +0.5
314,461 + Xcc-8004.324.1 0.25 +0.5
314,461 + Xcc-8004.324.1 0.25 +0.1
314,461 + Xcc-8004.324.1 0.25 +2.4
314,461 + Xcc-8004.324.1 0.25 -1.5
314,461 + Xcc-8004.324.1 0.25 -0.4
314,462 - Xcc-8004.324.1 0.25 -0.0
314,462 - Xcc-8004.324.1 0.25 -1.1
314,462 - Xcc-8004.324.1 0.25 -0.4
314,462 - Xcc-8004.324.1 0.25 -1.1
314,462 - Xcc-8004.324.1 0.25 -2.2
314,462 - Xcc-8004.324.1 0.25 -1.0
314,498 - Xcc-8004.324.1 0.31 -1.0
314,498 - Xcc-8004.324.1 0.31 -1.7
314,542 + Xcc-8004.324.1 0.40 +0.8
314,542 + Xcc-8004.324.1 0.40 +1.7
314,543 - Xcc-8004.324.1 0.40 -0.5
314,864 - -1.2

Or see this region's nucleotide sequence