Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.280.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.278.1 and Xcc-8004.279.1 are separated by 386 nucleotidesXcc-8004.279.1 and Xcc-8004.280.1 are separated by 101 nucleotidesXcc-8004.280.1 and Xcc-8004.281.1 are separated by 87 nucleotides Xcc-8004.278.1: Xcc-8004.278.1 - FIG01210164: hypothetical protein, at 266,651 to 267,109 Xcc-8004.278.1 Xcc-8004.279.1: Xcc-8004.279.1 - FIG01210420: hypothetical protein, at 267,496 to 267,816 Xcc-8004.279.1 Xcc-8004.280.1: Xcc-8004.280.1 - 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster, at 267,918 to 268,934 Xcc-8004.280.1 Xcc-8004.281.1: Xcc-8004.281.1 - MloA, at 269,022 to 270,170 Xcc-8004.281.1 Position (kb) 267 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 267.198 kb on + strandat 267.220 kb on + strandat 267.285 kb on + strandat 267.285 kb on + strandat 267.285 kb on + strandat 267.286 kb on - strandat 267.286 kb on - strandat 267.286 kb on - strandat 267.429 kb on + strandat 267.439 kb on + strandat 267.458 kb on + strandat 267.458 kb on + strandat 267.459 kb on - strandat 267.459 kb on - strandat 267.459 kb on - strandat 267.459 kb on - strandat 267.459 kb on - strandat 267.495 kb on + strandat 267.495 kb on + strandat 267.495 kb on + strandat 267.495 kb on + strandat 267.495 kb on + strandat 267.495 kb on + strandat 267.495 kb on + strandat 267.495 kb on + strandat 267.495 kb on + strandat 267.496 kb on - strandat 267.496 kb on - strandat 267.496 kb on - strandat 267.496 kb on - strandat 267.496 kb on - strandat 267.667 kb on + strand, within Xcc-8004.279.1at 267.667 kb on + strand, within Xcc-8004.279.1at 267.668 kb on - strand, within Xcc-8004.279.1at 267.668 kb on - strand, within Xcc-8004.279.1at 267.668 kb on - strand, within Xcc-8004.279.1at 267.668 kb on - strand, within Xcc-8004.279.1at 267.718 kb on - strand, within Xcc-8004.279.1at 267.849 kb on + strandat 267.849 kb on + strandat 267.849 kb on + strandat 267.850 kb on - strandat 267.850 kb on - strandat 267.850 kb on - strandat 267.877 kb on + strandat 267.877 kb on + strandat 267.877 kb on + strandat 267.877 kb on + strandat 267.877 kb on + strandat 267.877 kb on + strandat 267.877 kb on + strandat 267.877 kb on + strandat 267.877 kb on + strandat 267.878 kb on - strandat 267.878 kb on - strandat 267.878 kb on - strandat 267.878 kb on - strandat 267.878 kb on - strandat 267.911 kb on + strandat 267.956 kb on + strandat 267.956 kb on + strandat 267.957 kb on - strandat 267.957 kb on - strandat 268.014 kb on + strandat 268.014 kb on + strandat 268.014 kb on + strandat 268.014 kb on + strandat 268.015 kb on - strandat 268.015 kb on - strandat 268.015 kb on - strandat 268.015 kb on - strandat 268.015 kb on - strandat 268.042 kb on + strand, within Xcc-8004.280.1at 268.042 kb on + strand, within Xcc-8004.280.1at 268.043 kb on - strand, within Xcc-8004.280.1at 268.181 kb on + strand, within Xcc-8004.280.1at 268.181 kb on + strand, within Xcc-8004.280.1at 268.181 kb on + strand, within Xcc-8004.280.1at 268.181 kb on + strand, within Xcc-8004.280.1at 268.182 kb on - strand, within Xcc-8004.280.1at 268.182 kb on - strand, within Xcc-8004.280.1at 268.182 kb on - strand, within Xcc-8004.280.1at 268.182 kb on - strand, within Xcc-8004.280.1at 268.182 kb on - strand, within Xcc-8004.280.1at 268.182 kb on - strand, within Xcc-8004.280.1at 268.200 kb on + strand, within Xcc-8004.280.1at 268.201 kb on - strand, within Xcc-8004.280.1at 268.201 kb on - strand, within Xcc-8004.280.1at 268.348 kb on - strand, within Xcc-8004.280.1at 268.348 kb on - strand, within Xcc-8004.280.1at 268.377 kb on - strand, within Xcc-8004.280.1at 268.527 kb on + strand, within Xcc-8004.280.1at 268.527 kb on + strand, within Xcc-8004.280.1at 268.527 kb on + strand, within Xcc-8004.280.1at 268.527 kb on + strand, within Xcc-8004.280.1at 268.527 kb on + strand, within Xcc-8004.280.1at 268.527 kb on + strand, within Xcc-8004.280.1at 268.527 kb on + strand, within Xcc-8004.280.1at 268.528 kb on - strand, within Xcc-8004.280.1at 268.528 kb on - strand, within Xcc-8004.280.1at 269.058 kb on + strandat 269.058 kb on + strandat 269.059 kb on - strandat 269.093 kb on + strandat 269.093 kb on + strandat 269.152 kb on + strand, within Xcc-8004.281.1at 269.152 kb on + strand, within Xcc-8004.281.1at 269.152 kb on + strand, within Xcc-8004.281.1at 269.153 kb on - strand, within Xcc-8004.281.1at 269.153 kb on - strand, within Xcc-8004.281.1at 269.183 kb on + strand, within Xcc-8004.281.1at 269.183 kb on + strand, within Xcc-8004.281.1at 269.198 kb on + strand, within Xcc-8004.281.1at 269.198 kb on + strand, within Xcc-8004.281.1at 269.198 kb on + strand, within Xcc-8004.281.1at 269.199 kb on - strand, within Xcc-8004.281.1at 269.309 kb on + strand, within Xcc-8004.281.1at 269.343 kb on + strand, within Xcc-8004.281.1at 269.343 kb on + strand, within Xcc-8004.281.1at 269.362 kb on + strand, within Xcc-8004.281.1at 269.381 kb on + strand, within Xcc-8004.281.1at 269.382 kb on - strand, within Xcc-8004.281.1at 269.412 kb on - strand, within Xcc-8004.281.1at 269.487 kb on + strand, within Xcc-8004.281.1at 269.487 kb on + strand, within Xcc-8004.281.1at 269.487 kb on + strand, within Xcc-8004.281.1at 269.488 kb on - strand, within Xcc-8004.281.1at 269.488 kb on - strand, within Xcc-8004.281.1at 269.488 kb on - strand, within Xcc-8004.281.1at 269.488 kb on - strand, within Xcc-8004.281.1at 269.598 kb on + strand, within Xcc-8004.281.1at 269.598 kb on + strand, within Xcc-8004.281.1at 269.599 kb on - strand, within Xcc-8004.281.1at 269.706 kb on + strand, within Xcc-8004.281.1at 269.706 kb on + strand, within Xcc-8004.281.1at 269.706 kb on + strand, within Xcc-8004.281.1at 269.706 kb on + strand, within Xcc-8004.281.1at 269.707 kb on - strand, within Xcc-8004.281.1at 269.718 kb on + strand, within Xcc-8004.281.1at 269.718 kb on + strand, within Xcc-8004.281.1at 269.718 kb on + strand, within Xcc-8004.281.1at 269.719 kb on - strand, within Xcc-8004.281.1at 269.742 kb on + strand, within Xcc-8004.281.1at 269.742 kb on + strand, within Xcc-8004.281.1at 269.742 kb on + strand, within Xcc-8004.281.1at 269.743 kb on - strand, within Xcc-8004.281.1at 269.743 kb on - strand, within Xcc-8004.281.1at 269.745 kb on + strand, within Xcc-8004.281.1at 269.745 kb on + strand, within Xcc-8004.281.1at 269.745 kb on + strand, within Xcc-8004.281.1at 269.755 kb on + strand, within Xcc-8004.281.1at 269.799 kb on + strand, within Xcc-8004.281.1at 269.799 kb on + strand, within Xcc-8004.281.1at 269.799 kb on + strand, within Xcc-8004.281.1at 269.800 kb on - strand, within Xcc-8004.281.1at 269.800 kb on - strand, within Xcc-8004.281.1at 269.800 kb on - strand, within Xcc-8004.281.1at 269.800 kb on - strand, within Xcc-8004.281.1at 269.913 kb on + strand, within Xcc-8004.281.1at 269.913 kb on + strand, within Xcc-8004.281.1at 269.913 kb on + strand, within Xcc-8004.281.1at 269.914 kb on - strand, within Xcc-8004.281.1at 269.914 kb on - strand, within Xcc-8004.281.1at 269.915 kb on + strand, within Xcc-8004.281.1at 269.915 kb on + strand, within Xcc-8004.281.1at 269.915 kb on + strand, within Xcc-8004.281.1at 269.916 kb on - strand, within Xcc-8004.281.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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267,198 + +0.8
267,220 + +1.7
267,285 + -2.5
267,285 + -2.5
267,285 + +0.8
267,286 - -1.5
267,286 - +0.3
267,286 - -0.3
267,429 + -0.8
267,439 + -2.4
267,458 + -0.7
267,458 + +0.7
267,459 - -2.8
267,459 - -0.4
267,459 - -0.4
267,459 - -0.6
267,459 - +1.2
267,495 + +1.0
267,495 + +2.1
267,495 + +0.4
267,495 + +1.2
267,495 + -0.0
267,495 + +1.4
267,495 + -0.3
267,495 + -2.5
267,495 + +0.8
267,496 - -0.8
267,496 - -0.2
267,496 - +0.0
267,496 - -1.4
267,496 - -0.5
267,667 + Xcc-8004.279.1 0.53 +0.7
267,667 + Xcc-8004.279.1 0.53 -0.5
267,668 - Xcc-8004.279.1 0.54 -0.4
267,668 - Xcc-8004.279.1 0.54 -0.2
267,668 - Xcc-8004.279.1 0.54 -1.2
267,668 - Xcc-8004.279.1 0.54 -0.3
267,718 - Xcc-8004.279.1 0.69 -2.7
267,849 + +1.7
267,849 + -0.4
267,849 + -1.9
267,850 - +1.3
267,850 - -1.7
267,850 - +1.0
267,877 + -0.6
267,877 + -2.6
267,877 + -0.7
267,877 + -0.1
267,877 + +1.0
267,877 + +0.1
267,877 + -0.5
267,877 + +1.3
267,877 + +1.5
267,878 - -1.7
267,878 - -1.8
267,878 - +0.3
267,878 - +1.3
267,878 - -2.0
267,911 + -0.9
267,956 + +0.8
267,956 + +0.7
267,957 - -1.9
267,957 - +0.3
268,014 + +0.3
268,014 + -0.1
268,014 + +0.2
268,014 + -2.8
268,015 - -2.4
268,015 - -1.0
268,015 - +1.2
268,015 - +0.7
268,015 - -3.2
268,042 + Xcc-8004.280.1 0.12 +0.5
268,042 + Xcc-8004.280.1 0.12 -0.7
268,043 - Xcc-8004.280.1 0.12 -0.3
268,181 + Xcc-8004.280.1 0.26 -2.6
268,181 + Xcc-8004.280.1 0.26 -3.7
268,181 + Xcc-8004.280.1 0.26 -1.8
268,181 + Xcc-8004.280.1 0.26 +1.9
268,182 - Xcc-8004.280.1 0.26 -1.0
268,182 - Xcc-8004.280.1 0.26 -0.0
268,182 - Xcc-8004.280.1 0.26 -0.8
268,182 - Xcc-8004.280.1 0.26 +0.2
268,182 - Xcc-8004.280.1 0.26 -2.1
268,182 - Xcc-8004.280.1 0.26 -0.4
268,200 + Xcc-8004.280.1 0.28 +0.2
268,201 - Xcc-8004.280.1 0.28 -1.3
268,201 - Xcc-8004.280.1 0.28 -0.7
268,348 - Xcc-8004.280.1 0.42 -0.3
268,348 - Xcc-8004.280.1 0.42 -1.3
268,377 - Xcc-8004.280.1 0.45 -1.4
268,527 + Xcc-8004.280.1 0.60 -0.7
268,527 + Xcc-8004.280.1 0.60 -1.4
268,527 + Xcc-8004.280.1 0.60 -2.0
268,527 + Xcc-8004.280.1 0.60 -1.7
268,527 + Xcc-8004.280.1 0.60 -0.7
268,527 + Xcc-8004.280.1 0.60 -0.8
268,527 + Xcc-8004.280.1 0.60 -1.9
268,528 - Xcc-8004.280.1 0.60 +1.2
268,528 - Xcc-8004.280.1 0.60 -0.2
269,058 + -0.5
269,058 + -0.3
269,059 - +0.6
269,093 + +0.1
269,093 + +1.6
269,152 + Xcc-8004.281.1 0.11 +0.1
269,152 + Xcc-8004.281.1 0.11 +0.8
269,152 + Xcc-8004.281.1 0.11 +0.9
269,153 - Xcc-8004.281.1 0.11 +0.8
269,153 - Xcc-8004.281.1 0.11 +0.0
269,183 + Xcc-8004.281.1 0.14 -0.1
269,183 + Xcc-8004.281.1 0.14 +1.3
269,198 + Xcc-8004.281.1 0.15 +1.4
269,198 + Xcc-8004.281.1 0.15 -0.9
269,198 + Xcc-8004.281.1 0.15 +0.6
269,199 - Xcc-8004.281.1 0.15 +4.6
269,309 + Xcc-8004.281.1 0.25 -0.8
269,343 + Xcc-8004.281.1 0.28 +2.0
269,343 + Xcc-8004.281.1 0.28 +0.2
269,362 + Xcc-8004.281.1 0.30 +0.0
269,381 + Xcc-8004.281.1 0.31 +1.1
269,382 - Xcc-8004.281.1 0.31 -0.2
269,412 - Xcc-8004.281.1 0.34 -0.4
269,487 + Xcc-8004.281.1 0.40 -0.8
269,487 + Xcc-8004.281.1 0.40 -1.7
269,487 + Xcc-8004.281.1 0.40 -1.3
269,488 - Xcc-8004.281.1 0.41 +1.7
269,488 - Xcc-8004.281.1 0.41 -0.2
269,488 - Xcc-8004.281.1 0.41 +0.5
269,488 - Xcc-8004.281.1 0.41 -0.7
269,598 + Xcc-8004.281.1 0.50 +0.4
269,598 + Xcc-8004.281.1 0.50 +0.5
269,599 - Xcc-8004.281.1 0.50 +0.6
269,706 + Xcc-8004.281.1 0.60 -1.7
269,706 + Xcc-8004.281.1 0.60 -1.0
269,706 + Xcc-8004.281.1 0.60 +1.3
269,706 + Xcc-8004.281.1 0.60 -2.2
269,707 - Xcc-8004.281.1 0.60 -1.8
269,718 + Xcc-8004.281.1 0.61 -1.0
269,718 + Xcc-8004.281.1 0.61 -2.3
269,718 + Xcc-8004.281.1 0.61 +0.5
269,719 - Xcc-8004.281.1 0.61 +0.8
269,742 + Xcc-8004.281.1 0.63 +0.0
269,742 + Xcc-8004.281.1 0.63 +0.3
269,742 + Xcc-8004.281.1 0.63 -2.4
269,743 - Xcc-8004.281.1 0.63 -0.8
269,743 - Xcc-8004.281.1 0.63 +0.4
269,745 + Xcc-8004.281.1 0.63 -1.8
269,745 + Xcc-8004.281.1 0.63 -2.2
269,745 + Xcc-8004.281.1 0.63 -2.5
269,755 + Xcc-8004.281.1 0.64 -1.1
269,799 + Xcc-8004.281.1 0.68 -2.0
269,799 + Xcc-8004.281.1 0.68 +1.9
269,799 + Xcc-8004.281.1 0.68 +1.1
269,800 - Xcc-8004.281.1 0.68 +2.2
269,800 - Xcc-8004.281.1 0.68 +0.3
269,800 - Xcc-8004.281.1 0.68 +0.6
269,800 - Xcc-8004.281.1 0.68 +0.5
269,913 + Xcc-8004.281.1 0.78 +1.9
269,913 + Xcc-8004.281.1 0.78 -1.5
269,913 + Xcc-8004.281.1 0.78 +2.3
269,914 - Xcc-8004.281.1 0.78 +0.7
269,914 - Xcc-8004.281.1 0.78 +1.2
269,915 + Xcc-8004.281.1 0.78 +1.1
269,915 + Xcc-8004.281.1 0.78 -0.5
269,915 + Xcc-8004.281.1 0.78 -1.1
269,916 - Xcc-8004.281.1 0.78 +0.8

Or see this region's nucleotide sequence