Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1847.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1845.1 and Xcc-8004.1846.1 are separated by 370 nucleotidesXcc-8004.1846.1 and Xcc-8004.1847.1 are separated by 212 nucleotidesXcc-8004.1847.1 and Xcc-8004.1848.1 are separated by 26 nucleotidesXcc-8004.1848.1 and Xcc-8004.1849.1 are separated by 3 nucleotides Xcc-8004.1845.1: Xcc-8004.1845.1 - Mobile element protein, at 1,779,066 to 1,781,783 Xcc-8004.1845.1 Xcc-8004.1846.1: Xcc-8004.1846.1 - hypothetical protein, at 1,782,154 to 1,782,249 Xcc-8004.1846.1 Xcc-8004.1847.1: Xcc-8004.1847.1 - FIG003003: hypothetical protein, at 1,782,462 to 1,783,457 Xcc-8004.1847.1 Xcc-8004.1848.1: Xcc-8004.1848.1 - Ribonuclease E inhibitor RraA, at 1,783,484 to 1,783,984 Xcc-8004.1848.1 Xcc-8004.1849.1: Xcc-8004.1849.1 - Beta-lactamase (EC 3.5.2.6), at 1,783,988 to 1,785,346 Xcc-8004.1849.1 Position (kb) 1782 1783 1784Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1781.529 kb on - strandat 1781.536 kb on + strandat 1781.536 kb on + strandat 1781.536 kb on + strandat 1781.536 kb on + strandat 1781.537 kb on - strandat 1781.582 kb on - strandat 1781.582 kb on - strandat 1781.614 kb on - strandat 1781.823 kb on - strandat 1781.858 kb on + strandat 1781.920 kb on - strandat 1781.992 kb on - strandat 1781.992 kb on - strandat 1782.002 kb on + strandat 1782.003 kb on - strandat 1782.135 kb on + strandat 1782.135 kb on + strandat 1782.136 kb on - strandat 1782.136 kb on - strandat 1782.136 kb on - strandat 1782.426 kb on + strandat 1782.700 kb on + strand, within Xcc-8004.1847.1at 1782.700 kb on + strand, within Xcc-8004.1847.1at 1782.700 kb on + strand, within Xcc-8004.1847.1at 1782.701 kb on - strand, within Xcc-8004.1847.1at 1782.701 kb on - strand, within Xcc-8004.1847.1at 1782.701 kb on - strand, within Xcc-8004.1847.1at 1782.840 kb on + strand, within Xcc-8004.1847.1at 1783.025 kb on + strand, within Xcc-8004.1847.1at 1783.025 kb on + strand, within Xcc-8004.1847.1at 1783.026 kb on - strand, within Xcc-8004.1847.1at 1783.087 kb on + strand, within Xcc-8004.1847.1at 1783.088 kb on - strand, within Xcc-8004.1847.1at 1783.111 kb on + strand, within Xcc-8004.1847.1at 1783.112 kb on - strand, within Xcc-8004.1847.1at 1783.112 kb on - strand, within Xcc-8004.1847.1at 1783.112 kb on - strand, within Xcc-8004.1847.1at 1783.114 kb on + strand, within Xcc-8004.1847.1at 1783.114 kb on + strand, within Xcc-8004.1847.1at 1783.114 kb on + strand, within Xcc-8004.1847.1at 1783.115 kb on - strand, within Xcc-8004.1847.1at 1783.115 kb on - strand, within Xcc-8004.1847.1at 1783.115 kb on - strand, within Xcc-8004.1847.1at 1783.156 kb on + strand, within Xcc-8004.1847.1at 1783.157 kb on - strand, within Xcc-8004.1847.1at 1783.192 kb on + strand, within Xcc-8004.1847.1at 1783.219 kb on + strand, within Xcc-8004.1847.1at 1783.220 kb on - strand, within Xcc-8004.1847.1at 1783.220 kb on - strand, within Xcc-8004.1847.1at 1783.220 kb on - strand, within Xcc-8004.1847.1at 1783.220 kb on - strand, within Xcc-8004.1847.1at 1783.364 kb on + strandat 1783.365 kb on - strandat 1783.913 kb on + strand, within Xcc-8004.1848.1at 1783.913 kb on + strand, within Xcc-8004.1848.1at 1783.913 kb on + strand, within Xcc-8004.1848.1at 1783.914 kb on - strand, within Xcc-8004.1848.1at 1784.213 kb on + strand, within Xcc-8004.1849.1at 1784.213 kb on + strand, within Xcc-8004.1849.1at 1784.390 kb on + strand, within Xcc-8004.1849.1at 1784.390 kb on + strand, within Xcc-8004.1849.1at 1784.391 kb on - strand, within Xcc-8004.1849.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,781,529 - -0.5
1,781,536 + +1.5
1,781,536 + +2.5
1,781,536 + +0.6
1,781,536 + +0.7
1,781,537 - -1.3
1,781,582 - -1.7
1,781,582 - -0.2
1,781,614 - -0.9
1,781,823 - -1.9
1,781,858 + +0.8
1,781,920 - -0.0
1,781,992 - -2.5
1,781,992 - +0.7
1,782,002 + +0.4
1,782,003 - -0.8
1,782,135 + +0.2
1,782,135 + +0.1
1,782,136 - +1.0
1,782,136 - -1.6
1,782,136 - -1.6
1,782,426 + -1.4
1,782,700 + Xcc-8004.1847.1 0.24 +1.3
1,782,700 + Xcc-8004.1847.1 0.24 -0.4
1,782,700 + Xcc-8004.1847.1 0.24 -1.6
1,782,701 - Xcc-8004.1847.1 0.24 +1.1
1,782,701 - Xcc-8004.1847.1 0.24 -2.1
1,782,701 - Xcc-8004.1847.1 0.24 -0.5
1,782,840 + Xcc-8004.1847.1 0.38 -1.1
1,783,025 + Xcc-8004.1847.1 0.57 -2.7
1,783,025 + Xcc-8004.1847.1 0.57 -0.8
1,783,026 - Xcc-8004.1847.1 0.57 -0.5
1,783,087 + Xcc-8004.1847.1 0.63 +0.5
1,783,088 - Xcc-8004.1847.1 0.63 +0.3
1,783,111 + Xcc-8004.1847.1 0.65 +0.6
1,783,112 - Xcc-8004.1847.1 0.65 -3.3
1,783,112 - Xcc-8004.1847.1 0.65 +1.5
1,783,112 - Xcc-8004.1847.1 0.65 -0.3
1,783,114 + Xcc-8004.1847.1 0.65 +0.2
1,783,114 + Xcc-8004.1847.1 0.65 +0.2
1,783,114 + Xcc-8004.1847.1 0.65 +1.2
1,783,115 - Xcc-8004.1847.1 0.66 +0.3
1,783,115 - Xcc-8004.1847.1 0.66 -0.2
1,783,115 - Xcc-8004.1847.1 0.66 +0.8
1,783,156 + Xcc-8004.1847.1 0.70 -0.5
1,783,157 - Xcc-8004.1847.1 0.70 +1.6
1,783,192 + Xcc-8004.1847.1 0.73 -0.8
1,783,219 + Xcc-8004.1847.1 0.76 +1.0
1,783,220 - Xcc-8004.1847.1 0.76 +0.2
1,783,220 - Xcc-8004.1847.1 0.76 -2.9
1,783,220 - Xcc-8004.1847.1 0.76 +0.4
1,783,220 - Xcc-8004.1847.1 0.76 -2.4
1,783,364 + +1.0
1,783,365 - -0.4
1,783,913 + Xcc-8004.1848.1 0.86 +0.9
1,783,913 + Xcc-8004.1848.1 0.86 +0.4
1,783,913 + Xcc-8004.1848.1 0.86 +1.1
1,783,914 - Xcc-8004.1848.1 0.86 -1.4
1,784,213 + Xcc-8004.1849.1 0.17 -0.1
1,784,213 + Xcc-8004.1849.1 0.17 -0.7
1,784,390 + Xcc-8004.1849.1 0.30 +1.3
1,784,390 + Xcc-8004.1849.1 0.30 +0.4
1,784,391 - Xcc-8004.1849.1 0.30 +1.2

Or see this region's nucleotide sequence