Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1621.1 and Xcc-8004.1622.1 are separated by 34 nucleotides Xcc-8004.1622.1 and Xcc-8004.1623.1 are separated by 12 nucleotides Xcc-8004.1623.1 and Xcc-8004.1624.1 are separated by 1 nucleotides
Xcc-8004.1621.1: Xcc-8004.1621.1 - FIG01213569: hypothetical protein, at 1,561,325 to 1,562,002
Xcc-8004.1621.1
Xcc-8004.1622.1: Xcc-8004.1622.1 - Membrane protein with DUF350 domain, at 1,562,037 to 1,562,441
Xcc-8004.1622.1
Xcc-8004.1623.1: Xcc-8004.1623.1 - probable lipoprotein, at 1,562,454 to 1,563,029
Xcc-8004.1623.1
Xcc-8004.1624.1: Xcc-8004.1624.1 - synthetase/amidase, at 1,563,031 to 1,564,197
Xcc-8004.1624.1
Position (kb) 1562
1563
1564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1561.463 kb on + strand, within Xcc-8004.1621.1 at 1561.526 kb on + strand, within Xcc-8004.1621.1 at 1561.526 kb on + strand, within Xcc-8004.1621.1 at 1561.527 kb on - strand, within Xcc-8004.1621.1 at 1561.527 kb on - strand, within Xcc-8004.1621.1 at 1561.553 kb on + strand, within Xcc-8004.1621.1 at 1561.571 kb on + strand, within Xcc-8004.1621.1 at 1561.572 kb on - strand, within Xcc-8004.1621.1 at 1561.572 kb on - strand, within Xcc-8004.1621.1 at 1561.643 kb on + strand, within Xcc-8004.1621.1 at 1561.814 kb on + strand, within Xcc-8004.1621.1 at 1561.814 kb on + strand, within Xcc-8004.1621.1 at 1561.815 kb on - strand, within Xcc-8004.1621.1 at 1561.815 kb on - strand, within Xcc-8004.1621.1 at 1561.815 kb on - strand, within Xcc-8004.1621.1 at 1561.857 kb on - strand, within Xcc-8004.1621.1 at 1561.869 kb on - strand, within Xcc-8004.1621.1 at 1561.869 kb on - strand, within Xcc-8004.1621.1 at 1561.869 kb on - strand, within Xcc-8004.1621.1 at 1561.955 kb on + strand at 1562.079 kb on + strand, within Xcc-8004.1622.1 at 1562.310 kb on + strand, within Xcc-8004.1622.1 at 1562.310 kb on + strand, within Xcc-8004.1622.1 at 1562.311 kb on - strand, within Xcc-8004.1622.1 at 1562.572 kb on - strand, within Xcc-8004.1623.1 at 1562.619 kb on + strand, within Xcc-8004.1623.1 at 1562.619 kb on + strand, within Xcc-8004.1623.1 at 1562.620 kb on - strand, within Xcc-8004.1623.1 at 1562.809 kb on - strand, within Xcc-8004.1623.1 at 1562.827 kb on + strand, within Xcc-8004.1623.1 at 1562.829 kb on + strand, within Xcc-8004.1623.1 at 1562.856 kb on + strand, within Xcc-8004.1623.1 at 1562.856 kb on + strand, within Xcc-8004.1623.1 at 1562.856 kb on + strand, within Xcc-8004.1623.1 at 1562.857 kb on - strand, within Xcc-8004.1623.1 at 1562.857 kb on - strand, within Xcc-8004.1623.1 at 1563.039 kb on + strand at 1563.039 kb on + strand at 1563.040 kb on - strand at 1563.040 kb on - strand at 1563.040 kb on - strand at 1563.121 kb on + strand at 1563.122 kb on - strand at 1563.122 kb on - strand at 1563.142 kb on + strand at 1563.325 kb on + strand, within Xcc-8004.1624.1 at 1563.326 kb on - strand, within Xcc-8004.1624.1 at 1563.347 kb on - strand, within Xcc-8004.1624.1 at 1563.373 kb on + strand, within Xcc-8004.1624.1 at 1563.373 kb on + strand, within Xcc-8004.1624.1 at 1563.373 kb on + strand, within Xcc-8004.1624.1 at 1563.373 kb on + strand, within Xcc-8004.1624.1 at 1563.374 kb on - strand, within Xcc-8004.1624.1 at 1563.374 kb on - strand, within Xcc-8004.1624.1 at 1563.385 kb on + strand, within Xcc-8004.1624.1 at 1563.386 kb on - strand, within Xcc-8004.1624.1 at 1563.406 kb on + strand, within Xcc-8004.1624.1 at 1563.406 kb on + strand, within Xcc-8004.1624.1 at 1563.406 kb on + strand, within Xcc-8004.1624.1 at 1563.484 kb on + strand, within Xcc-8004.1624.1 at 1563.484 kb on + strand, within Xcc-8004.1624.1 at 1563.484 kb on + strand, within Xcc-8004.1624.1 at 1563.485 kb on - strand, within Xcc-8004.1624.1 at 1563.736 kb on + strand, within Xcc-8004.1624.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 1,561,463 + Xcc-8004.1621.1 0.20 +0.7 1,561,526 + Xcc-8004.1621.1 0.30 -1.2 1,561,526 + Xcc-8004.1621.1 0.30 -0.9 1,561,527 - Xcc-8004.1621.1 0.30 -1.7 1,561,527 - Xcc-8004.1621.1 0.30 +0.4 1,561,553 + Xcc-8004.1621.1 0.34 -1.5 1,561,571 + Xcc-8004.1621.1 0.36 -1.4 1,561,572 - Xcc-8004.1621.1 0.36 +0.9 1,561,572 - Xcc-8004.1621.1 0.36 +0.6 1,561,643 + Xcc-8004.1621.1 0.47 +0.3 1,561,814 + Xcc-8004.1621.1 0.72 -0.7 1,561,814 + Xcc-8004.1621.1 0.72 +0.7 1,561,815 - Xcc-8004.1621.1 0.72 -2.0 1,561,815 - Xcc-8004.1621.1 0.72 +0.4 1,561,815 - Xcc-8004.1621.1 0.72 -1.7 1,561,857 - Xcc-8004.1621.1 0.78 +1.4 1,561,869 - Xcc-8004.1621.1 0.80 -0.6 1,561,869 - Xcc-8004.1621.1 0.80 -1.7 1,561,869 - Xcc-8004.1621.1 0.80 -1.9 1,561,955 + -0.4 1,562,079 + Xcc-8004.1622.1 0.10 +0.5 1,562,310 + Xcc-8004.1622.1 0.67 +0.3 1,562,310 + Xcc-8004.1622.1 0.67 +1.7 1,562,311 - Xcc-8004.1622.1 0.68 -1.0 1,562,572 - Xcc-8004.1623.1 0.20 -1.7 1,562,619 + Xcc-8004.1623.1 0.29 -0.3 1,562,619 + Xcc-8004.1623.1 0.29 -1.9 1,562,620 - Xcc-8004.1623.1 0.29 -0.3 1,562,809 - Xcc-8004.1623.1 0.62 +0.3 1,562,827 + Xcc-8004.1623.1 0.65 -0.1 1,562,829 + Xcc-8004.1623.1 0.65 +1.3 1,562,856 + Xcc-8004.1623.1 0.70 -0.7 1,562,856 + Xcc-8004.1623.1 0.70 +1.1 1,562,856 + Xcc-8004.1623.1 0.70 +0.6 1,562,857 - Xcc-8004.1623.1 0.70 -0.1 1,562,857 - Xcc-8004.1623.1 0.70 -1.7 1,563,039 + +2.0 1,563,039 + -0.3 1,563,040 - -1.0 1,563,040 - -0.9 1,563,040 - -0.1 1,563,121 + -1.1 1,563,122 - -1.0 1,563,122 - -1.9 1,563,142 + -1.5 1,563,325 + Xcc-8004.1624.1 0.25 +1.7 1,563,326 - Xcc-8004.1624.1 0.25 -1.5 1,563,347 - Xcc-8004.1624.1 0.27 +0.1 1,563,373 + Xcc-8004.1624.1 0.29 -2.3 1,563,373 + Xcc-8004.1624.1 0.29 +0.1 1,563,373 + Xcc-8004.1624.1 0.29 -0.4 1,563,373 + Xcc-8004.1624.1 0.29 +0.0 1,563,374 - Xcc-8004.1624.1 0.29 +1.3 1,563,374 - Xcc-8004.1624.1 0.29 +1.5 1,563,385 + Xcc-8004.1624.1 0.30 -2.8 1,563,386 - Xcc-8004.1624.1 0.30 +0.1 1,563,406 + Xcc-8004.1624.1 0.32 -0.6 1,563,406 + Xcc-8004.1624.1 0.32 -0.7 1,563,406 + Xcc-8004.1624.1 0.32 +1.1 1,563,484 + Xcc-8004.1624.1 0.39 -0.3 1,563,484 + Xcc-8004.1624.1 0.39 +1.0 1,563,484 + Xcc-8004.1624.1 0.39 -0.1 1,563,485 - Xcc-8004.1624.1 0.39 +0.4 1,563,736 + Xcc-8004.1624.1 0.60 +1.8
Or see this region's nucleotide sequence