Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1194.1 and Xcc-8004.1196.1 are separated by 215 nucleotides Xcc-8004.1196.1 and Xcc-8004.1198.1 are separated by 578 nucleotides
Xcc-8004.1194.1: Xcc-8004.1194.1 - Type IV pilus biogenesis protein PilM, at 1,128,710 to 1,129,768
Xcc-8004.1194.1
Xcc-8004.1196.1: Xcc-8004.1196.1 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 1,129,984 to 1,132,410
Xcc-8004.1196.1
Xcc-8004.1198.1: Xcc-8004.1198.1 - FIG00856772: hypothetical protein, at 1,132,989 to 1,133,639
Xcc-8004.1198.1
Position (kb) 1129
1130
1131
1132
1133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1129.008 kb on + strand, within Xcc-8004.1194.1 at 1129.009 kb on - strand, within Xcc-8004.1194.1 at 1129.009 kb on - strand, within Xcc-8004.1194.1 at 1129.009 kb on - strand, within Xcc-8004.1194.1 at 1129.009 kb on - strand, within Xcc-8004.1194.1 at 1129.009 kb on - strand, within Xcc-8004.1194.1 at 1129.009 kb on - strand, within Xcc-8004.1194.1 at 1129.009 kb on - strand, within Xcc-8004.1194.1 at 1129.009 kb on - strand, within Xcc-8004.1194.1 at 1129.056 kb on + strand, within Xcc-8004.1194.1 at 1129.056 kb on + strand, within Xcc-8004.1194.1 at 1129.056 kb on + strand, within Xcc-8004.1194.1 at 1129.056 kb on + strand, within Xcc-8004.1194.1 at 1129.056 kb on + strand, within Xcc-8004.1194.1 at 1129.057 kb on - strand, within Xcc-8004.1194.1 at 1129.057 kb on - strand, within Xcc-8004.1194.1 at 1129.126 kb on - strand, within Xcc-8004.1194.1 at 1129.126 kb on - strand, within Xcc-8004.1194.1 at 1129.126 kb on - strand, within Xcc-8004.1194.1 at 1129.431 kb on + strand, within Xcc-8004.1194.1 at 1129.431 kb on + strand, within Xcc-8004.1194.1 at 1129.431 kb on + strand, within Xcc-8004.1194.1 at 1129.431 kb on + strand, within Xcc-8004.1194.1 at 1129.431 kb on + strand, within Xcc-8004.1194.1 at 1129.431 kb on + strand, within Xcc-8004.1194.1 at 1129.431 kb on + strand, within Xcc-8004.1194.1 at 1129.431 kb on + strand, within Xcc-8004.1194.1 at 1129.431 kb on + strand, within Xcc-8004.1194.1 at 1129.431 kb on + strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.432 kb on - strand, within Xcc-8004.1194.1 at 1129.656 kb on + strand, within Xcc-8004.1194.1 at 1129.656 kb on + strand, within Xcc-8004.1194.1 at 1129.656 kb on + strand, within Xcc-8004.1194.1 at 1129.656 kb on + strand, within Xcc-8004.1194.1 at 1129.656 kb on + strand, within Xcc-8004.1194.1 at 1129.657 kb on - strand, within Xcc-8004.1194.1 at 1129.657 kb on - strand, within Xcc-8004.1194.1 at 1129.657 kb on - strand, within Xcc-8004.1194.1 at 1129.700 kb on + strand at 1129.700 kb on + strand at 1129.701 kb on - strand at 1129.701 kb on - strand at 1129.701 kb on - strand at 1129.701 kb on - strand at 1129.735 kb on + strand at 1129.735 kb on + strand at 1129.735 kb on + strand at 1129.735 kb on + strand at 1129.735 kb on + strand at 1129.735 kb on + strand at 1129.735 kb on + strand at 1129.735 kb on + strand at 1129.735 kb on + strand at 1129.735 kb on + strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.736 kb on - strand at 1129.757 kb on + strand at 1129.758 kb on - strand at 1129.820 kb on + strand at 1129.820 kb on + strand at 1129.821 kb on - strand at 1129.821 kb on - strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.941 kb on + strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.942 kb on - strand at 1129.943 kb on + strand at 1129.943 kb on + strand at 1129.943 kb on + strand at 1129.943 kb on + strand at 1129.943 kb on + strand at 1129.944 kb on - strand at 1129.944 kb on - strand at 1129.944 kb on - strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.981 kb on + strand at 1129.982 kb on - strand at 1129.982 kb on - strand at 1129.982 kb on - strand at 1129.982 kb on - strand at 1129.982 kb on - strand at 1129.982 kb on - strand at 1129.982 kb on - strand at 1129.982 kb on - strand at 1129.982 kb on - strand at 1130.071 kb on + strand at 1130.071 kb on + strand at 1130.072 kb on - strand at 1130.072 kb on - strand at 1130.072 kb on - strand at 1130.072 kb on - strand at 1130.072 kb on - strand at 1130.075 kb on - strand at 1130.140 kb on + strand at 1130.140 kb on + strand at 1130.140 kb on + strand at 1130.140 kb on + strand at 1130.141 kb on - strand at 1130.141 kb on - strand at 1130.141 kb on - strand at 1130.146 kb on + strand at 1130.147 kb on - strand at 1130.287 kb on + strand, within Xcc-8004.1196.1 at 1130.288 kb on - strand, within Xcc-8004.1196.1 at 1130.288 kb on - strand, within Xcc-8004.1196.1 at 1130.402 kb on - strand, within Xcc-8004.1196.1 at 1130.408 kb on - strand, within Xcc-8004.1196.1 at 1130.408 kb on - strand, within Xcc-8004.1196.1 at 1130.542 kb on + strand, within Xcc-8004.1196.1 at 1130.543 kb on - strand, within Xcc-8004.1196.1 at 1130.545 kb on + strand, within Xcc-8004.1196.1 at 1130.545 kb on + strand, within Xcc-8004.1196.1 at 1130.545 kb on + strand, within Xcc-8004.1196.1 at 1130.546 kb on - strand, within Xcc-8004.1196.1 at 1130.546 kb on - strand, within Xcc-8004.1196.1 at 1130.546 kb on - strand, within Xcc-8004.1196.1 at 1130.548 kb on + strand, within Xcc-8004.1196.1 at 1130.548 kb on + strand, within Xcc-8004.1196.1 at 1130.549 kb on - strand, within Xcc-8004.1196.1 at 1130.549 kb on - strand, within Xcc-8004.1196.1 at 1130.668 kb on + strand, within Xcc-8004.1196.1 at 1130.668 kb on + strand, within Xcc-8004.1196.1 at 1130.669 kb on - strand, within Xcc-8004.1196.1 at 1130.671 kb on + strand, within Xcc-8004.1196.1 at 1130.671 kb on + strand, within Xcc-8004.1196.1 at 1130.672 kb on - strand, within Xcc-8004.1196.1 at 1130.672 kb on - strand, within Xcc-8004.1196.1 at 1130.779 kb on + strand, within Xcc-8004.1196.1 at 1130.780 kb on - strand, within Xcc-8004.1196.1 at 1130.780 kb on - strand, within Xcc-8004.1196.1 at 1130.788 kb on + strand, within Xcc-8004.1196.1 at 1130.788 kb on + strand, within Xcc-8004.1196.1 at 1130.788 kb on + strand, within Xcc-8004.1196.1 at 1130.788 kb on + strand, within Xcc-8004.1196.1 at 1130.789 kb on - strand, within Xcc-8004.1196.1 at 1130.930 kb on - strand, within Xcc-8004.1196.1 at 1130.930 kb on - strand, within Xcc-8004.1196.1 at 1131.092 kb on + strand, within Xcc-8004.1196.1 at 1131.092 kb on + strand, within Xcc-8004.1196.1 at 1131.383 kb on - strand, within Xcc-8004.1196.1 at 1131.383 kb on - strand, within Xcc-8004.1196.1 at 1131.596 kb on - strand, within Xcc-8004.1196.1 at 1131.596 kb on - strand, within Xcc-8004.1196.1 at 1131.813 kb on + strand, within Xcc-8004.1196.1 at 1131.995 kb on - strand, within Xcc-8004.1196.1 at 1131.995 kb on - strand, within Xcc-8004.1196.1 at 1132.231 kb on + strand at 1132.231 kb on + strand at 1132.232 kb on - strand at 1132.232 kb on - strand at 1132.232 kb on - strand at 1132.232 kb on - strand at 1132.232 kb on - strand at 1132.357 kb on + strand at 1132.357 kb on + strand at 1132.357 kb on + strand at 1132.358 kb on - strand at 1132.363 kb on + strand at 1132.363 kb on + strand at 1132.364 kb on - strand at 1132.409 kb on - strand at 1132.429 kb on - strand at 1132.542 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.551 kb on + strand at 1132.719 kb on + strand at 1132.720 kb on - strand at 1132.808 kb on + strand at 1132.808 kb on + strand at 1132.809 kb on - strand at 1132.809 kb on - strand at 1132.942 kb on + strand at 1132.943 kb on - strand at 1132.953 kb on - strand at 1133.187 kb on + strand, within Xcc-8004.1198.1 at 1133.188 kb on - strand, within Xcc-8004.1198.1 at 1133.188 kb on - strand, within Xcc-8004.1198.1 at 1133.188 kb on - strand, within Xcc-8004.1198.1 at 1133.188 kb on - strand, within Xcc-8004.1198.1 at 1133.396 kb on + strand, within Xcc-8004.1198.1 at 1133.397 kb on - strand, within Xcc-8004.1198.1 at 1133.397 kb on - strand, within Xcc-8004.1198.1 at 1133.397 kb on - strand, within Xcc-8004.1198.1 at 1133.397 kb on - strand, within Xcc-8004.1198.1 at 1133.397 kb on - strand, within Xcc-8004.1198.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 1,129,008 + Xcc-8004.1194.1 0.28 +2.0 1,129,009 - Xcc-8004.1194.1 0.28 +0.8 1,129,009 - Xcc-8004.1194.1 0.28 +0.9 1,129,009 - Xcc-8004.1194.1 0.28 -0.4 1,129,009 - Xcc-8004.1194.1 0.28 +0.8 1,129,009 - Xcc-8004.1194.1 0.28 -0.0 1,129,009 - Xcc-8004.1194.1 0.28 -1.1 1,129,009 - Xcc-8004.1194.1 0.28 +1.4 1,129,009 - Xcc-8004.1194.1 0.28 +2.5 1,129,056 + Xcc-8004.1194.1 0.33 +0.7 1,129,056 + Xcc-8004.1194.1 0.33 -0.2 1,129,056 + Xcc-8004.1194.1 0.33 -1.7 1,129,056 + Xcc-8004.1194.1 0.33 -2.5 1,129,056 + Xcc-8004.1194.1 0.33 +0.8 1,129,057 - Xcc-8004.1194.1 0.33 +0.3 1,129,057 - Xcc-8004.1194.1 0.33 -2.0 1,129,126 - Xcc-8004.1194.1 0.39 +1.0 1,129,126 - Xcc-8004.1194.1 0.39 +0.2 1,129,126 - Xcc-8004.1194.1 0.39 +0.0 1,129,431 + Xcc-8004.1194.1 0.68 -0.3 1,129,431 + Xcc-8004.1194.1 0.68 +0.3 1,129,431 + Xcc-8004.1194.1 0.68 +1.4 1,129,431 + Xcc-8004.1194.1 0.68 +1.0 1,129,431 + Xcc-8004.1194.1 0.68 +0.3 1,129,431 + Xcc-8004.1194.1 0.68 -0.5 1,129,431 + Xcc-8004.1194.1 0.68 -0.3 1,129,431 + Xcc-8004.1194.1 0.68 -0.3 1,129,431 + Xcc-8004.1194.1 0.68 +0.1 1,129,431 + Xcc-8004.1194.1 0.68 +3.7 1,129,432 - Xcc-8004.1194.1 0.68 -1.0 1,129,432 - Xcc-8004.1194.1 0.68 +0.1 1,129,432 - Xcc-8004.1194.1 0.68 +1.9 1,129,432 - Xcc-8004.1194.1 0.68 -1.2 1,129,432 - Xcc-8004.1194.1 0.68 -0.5 1,129,432 - Xcc-8004.1194.1 0.68 +0.6 1,129,432 - Xcc-8004.1194.1 0.68 -0.7 1,129,432 - Xcc-8004.1194.1 0.68 -0.9 1,129,432 - Xcc-8004.1194.1 0.68 -0.0 1,129,432 - Xcc-8004.1194.1 0.68 +0.7 1,129,432 - Xcc-8004.1194.1 0.68 -1.6 1,129,656 + Xcc-8004.1194.1 0.89 -0.5 1,129,656 + Xcc-8004.1194.1 0.89 +0.8 1,129,656 + Xcc-8004.1194.1 0.89 -0.2 1,129,656 + Xcc-8004.1194.1 0.89 +0.5 1,129,656 + Xcc-8004.1194.1 0.89 -0.9 1,129,657 - Xcc-8004.1194.1 0.89 -3.0 1,129,657 - Xcc-8004.1194.1 0.89 +0.6 1,129,657 - Xcc-8004.1194.1 0.89 +0.4 1,129,700 + -0.2 1,129,700 + -0.4 1,129,701 - -1.6 1,129,701 - +0.7 1,129,701 - -0.4 1,129,701 - -0.4 1,129,735 + -0.0 1,129,735 + +0.3 1,129,735 + +0.3 1,129,735 + +0.3 1,129,735 + +0.3 1,129,735 + -0.1 1,129,735 + -1.5 1,129,735 + -0.2 1,129,735 + +0.0 1,129,735 + +0.8 1,129,736 - -0.1 1,129,736 - -0.9 1,129,736 - +2.0 1,129,736 - -0.4 1,129,736 - -1.1 1,129,736 - -0.1 1,129,736 - -0.0 1,129,736 - -0.1 1,129,736 - -0.5 1,129,736 - +0.1 1,129,736 - +0.1 1,129,736 - +0.0 1,129,736 - -1.2 1,129,736 - +0.4 1,129,757 + +0.6 1,129,758 - +0.1 1,129,820 + +1.3 1,129,820 + +0.5 1,129,821 - -2.2 1,129,821 - +1.4 1,129,941 + +0.5 1,129,941 + -1.4 1,129,941 + -0.2 1,129,941 + +0.7 1,129,941 + -0.5 1,129,941 + -0.4 1,129,941 + +0.6 1,129,941 + -0.1 1,129,941 + +0.3 1,129,941 + -0.8 1,129,941 + -2.3 1,129,941 + +0.1 1,129,942 - -1.9 1,129,942 - +1.2 1,129,942 - -0.8 1,129,942 - -2.0 1,129,942 - -0.9 1,129,942 - +1.3 1,129,942 - -1.5 1,129,942 - -2.6 1,129,942 - -1.9 1,129,942 - -0.9 1,129,942 - +1.1 1,129,942 - -0.5 1,129,942 - -1.5 1,129,942 - +0.1 1,129,942 - +1.6 1,129,942 - -0.1 1,129,942 - -0.5 1,129,943 + +0.1 1,129,943 + -1.5 1,129,943 + -0.9 1,129,943 + +0.3 1,129,943 + +0.2 1,129,944 - -0.8 1,129,944 - -0.4 1,129,944 - -2.7 1,129,981 + +0.7 1,129,981 + -0.2 1,129,981 + -2.0 1,129,981 + -0.0 1,129,981 + -1.7 1,129,981 + -0.4 1,129,981 + +0.2 1,129,981 + +0.5 1,129,981 + -0.5 1,129,981 + -0.1 1,129,981 + +1.0 1,129,981 + +0.7 1,129,981 + +0.1 1,129,981 + -0.5 1,129,982 - +2.1 1,129,982 - -1.3 1,129,982 - -0.3 1,129,982 - +0.4 1,129,982 - +0.4 1,129,982 - +3.0 1,129,982 - -0.1 1,129,982 - -0.9 1,129,982 - +0.3 1,130,071 + +1.5 1,130,071 + -0.6 1,130,072 - -1.6 1,130,072 - +1.6 1,130,072 - -0.6 1,130,072 - +0.7 1,130,072 - +1.1 1,130,075 - +0.1 1,130,140 + +0.1 1,130,140 + +1.1 1,130,140 + +0.8 1,130,140 + -1.2 1,130,141 - +0.3 1,130,141 - -1.5 1,130,141 - -0.7 1,130,146 + -1.3 1,130,147 - -0.6 1,130,287 + Xcc-8004.1196.1 0.12 -1.6 1,130,288 - Xcc-8004.1196.1 0.13 -0.5 1,130,288 - Xcc-8004.1196.1 0.13 +0.1 1,130,402 - Xcc-8004.1196.1 0.17 +0.4 1,130,408 - Xcc-8004.1196.1 0.17 -1.9 1,130,408 - Xcc-8004.1196.1 0.17 -0.3 1,130,542 + Xcc-8004.1196.1 0.23 -0.1 1,130,543 - Xcc-8004.1196.1 0.23 -0.7 1,130,545 + Xcc-8004.1196.1 0.23 +2.7 1,130,545 + Xcc-8004.1196.1 0.23 -0.5 1,130,545 + Xcc-8004.1196.1 0.23 -0.4 1,130,546 - Xcc-8004.1196.1 0.23 +0.1 1,130,546 - Xcc-8004.1196.1 0.23 -0.5 1,130,546 - Xcc-8004.1196.1 0.23 -2.3 1,130,548 + Xcc-8004.1196.1 0.23 +0.7 1,130,548 + Xcc-8004.1196.1 0.23 -3.4 1,130,549 - Xcc-8004.1196.1 0.23 +2.2 1,130,549 - Xcc-8004.1196.1 0.23 +1.0 1,130,668 + Xcc-8004.1196.1 0.28 -0.6 1,130,668 + Xcc-8004.1196.1 0.28 -3.0 1,130,669 - Xcc-8004.1196.1 0.28 -0.3 1,130,671 + Xcc-8004.1196.1 0.28 +1.0 1,130,671 + Xcc-8004.1196.1 0.28 +1.7 1,130,672 - Xcc-8004.1196.1 0.28 +2.9 1,130,672 - Xcc-8004.1196.1 0.28 +1.7 1,130,779 + Xcc-8004.1196.1 0.33 +0.7 1,130,780 - Xcc-8004.1196.1 0.33 +1.2 1,130,780 - Xcc-8004.1196.1 0.33 +2.1 1,130,788 + Xcc-8004.1196.1 0.33 -1.5 1,130,788 + Xcc-8004.1196.1 0.33 +0.1 1,130,788 + Xcc-8004.1196.1 0.33 -0.6 1,130,788 + Xcc-8004.1196.1 0.33 +1.5 1,130,789 - Xcc-8004.1196.1 0.33 -0.4 1,130,930 - Xcc-8004.1196.1 0.39 -2.1 1,130,930 - Xcc-8004.1196.1 0.39 +1.7 1,131,092 + Xcc-8004.1196.1 0.46 -0.1 1,131,092 + Xcc-8004.1196.1 0.46 -0.2 1,131,383 - Xcc-8004.1196.1 0.58 -1.7 1,131,383 - Xcc-8004.1196.1 0.58 +1.7 1,131,596 - Xcc-8004.1196.1 0.66 +1.9 1,131,596 - Xcc-8004.1196.1 0.66 +2.5 1,131,813 + Xcc-8004.1196.1 0.75 -0.9 1,131,995 - Xcc-8004.1196.1 0.83 -0.9 1,131,995 - Xcc-8004.1196.1 0.83 +1.3 1,132,231 + -1.2 1,132,231 + -1.0 1,132,232 - +0.1 1,132,232 - -1.5 1,132,232 - +1.2 1,132,232 - -2.7 1,132,232 - -1.1 1,132,357 + -0.1 1,132,357 + -3.0 1,132,357 + -1.6 1,132,358 - +0.8 1,132,363 + -0.7 1,132,363 + -1.4 1,132,364 - -0.2 1,132,409 - -0.7 1,132,429 - -0.0 1,132,542 + -2.1 1,132,551 + -2.3 1,132,551 + -0.3 1,132,551 + +1.2 1,132,551 + +0.3 1,132,551 + +0.5 1,132,551 + -1.7 1,132,551 + +0.7 1,132,551 + -0.2 1,132,551 + -1.8 1,132,551 + -0.1 1,132,551 + +0.2 1,132,551 + +0.0 1,132,719 + +0.3 1,132,720 - +1.2 1,132,808 + -2.5 1,132,808 + -0.8 1,132,809 - -1.1 1,132,809 - +1.5 1,132,942 + +1.0 1,132,943 - +0.4 1,132,953 - -0.2 1,133,187 + Xcc-8004.1198.1 0.30 -0.9 1,133,188 - Xcc-8004.1198.1 0.31 -0.6 1,133,188 - Xcc-8004.1198.1 0.31 +0.2 1,133,188 - Xcc-8004.1198.1 0.31 -0.1 1,133,188 - Xcc-8004.1198.1 0.31 -2.7 1,133,396 + Xcc-8004.1198.1 0.63 +0.4 1,133,397 - Xcc-8004.1198.1 0.63 +0.4 1,133,397 - Xcc-8004.1198.1 0.63 +1.9 1,133,397 - Xcc-8004.1198.1 0.63 -1.3 1,133,397 - Xcc-8004.1198.1 0.63 +0.0 1,133,397 - Xcc-8004.1198.1 0.63 -0.5
Or see this region's nucleotide sequence