Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1151.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1148.1 and Xcc-8004.1149.1 overlap by 14 nucleotidesXcc-8004.1149.1 and Xcc-8004.1150.1 overlap by 53 nucleotidesXcc-8004.1150.1 and Xcc-8004.1151.1 are separated by 105 nucleotidesXcc-8004.1151.1 and Xcc-8004.1152.1 are separated by 13 nucleotidesXcc-8004.1152.1 and Xcc-8004.1153.1 are separated by 130 nucleotides Xcc-8004.1148.1: Xcc-8004.1148.1 - hypothetical protein, at 1,088,499 to 1,088,828 Xcc-8004.1148.1 Xcc-8004.1149.1: Xcc-8004.1149.1 - Mobile element protein, at 1,088,815 to 1,089,285 Xcc-8004.1149.1 Xcc-8004.1150.1: Xcc-8004.1150.1 - Mobile element protein, at 1,089,233 to 1,089,613 Xcc-8004.1150.1 Xcc-8004.1151.1: Xcc-8004.1151.1 - Beta-lactamase, at 1,089,719 to 1,090,531 Xcc-8004.1151.1 Xcc-8004.1152.1: Xcc-8004.1152.1 - Endonuclease, at 1,090,545 to 1,091,357 Xcc-8004.1152.1 Xcc-8004.1153.1: Xcc-8004.1153.1 - Mobile element protein, at 1,091,488 to 1,091,868 Xcc-8004.1153.1 Position (kb) 1089 1090 1091Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1088.771 kb on - strand, within Xcc-8004.1148.1at 1088.831 kb on - strandat 1088.831 kb on - strandat 1088.831 kb on - strandat 1089.657 kb on + strandat 1089.657 kb on + strandat 1089.711 kb on + strandat 1089.712 kb on - strandat 1089.816 kb on + strand, within Xcc-8004.1151.1at 1089.816 kb on + strand, within Xcc-8004.1151.1at 1089.816 kb on + strand, within Xcc-8004.1151.1at 1089.816 kb on + strand, within Xcc-8004.1151.1at 1089.816 kb on + strand, within Xcc-8004.1151.1at 1089.817 kb on - strand, within Xcc-8004.1151.1at 1089.817 kb on - strand, within Xcc-8004.1151.1at 1089.817 kb on - strand, within Xcc-8004.1151.1at 1089.817 kb on - strand, within Xcc-8004.1151.1at 1089.817 kb on - strand, within Xcc-8004.1151.1at 1089.912 kb on + strand, within Xcc-8004.1151.1at 1089.954 kb on + strand, within Xcc-8004.1151.1at 1089.954 kb on + strand, within Xcc-8004.1151.1at 1089.955 kb on - strand, within Xcc-8004.1151.1at 1090.422 kb on + strand, within Xcc-8004.1151.1at 1090.479 kb on + strandat 1090.480 kb on - strandat 1090.480 kb on - strandat 1090.480 kb on - strandat 1090.483 kb on + strandat 1090.484 kb on - strandat 1090.484 kb on - strandat 1090.535 kb on + strandat 1090.535 kb on + strandat 1090.536 kb on - strandat 1090.627 kb on + strand, within Xcc-8004.1152.1at 1090.628 kb on - strand, within Xcc-8004.1152.1at 1090.628 kb on - strand, within Xcc-8004.1152.1at 1090.637 kb on + strand, within Xcc-8004.1152.1at 1090.640 kb on - strand, within Xcc-8004.1152.1at 1090.640 kb on - strand, within Xcc-8004.1152.1at 1090.640 kb on - strand, within Xcc-8004.1152.1at 1090.640 kb on - strand, within Xcc-8004.1152.1at 1090.640 kb on - strand, within Xcc-8004.1152.1at 1090.654 kb on - strand, within Xcc-8004.1152.1at 1090.654 kb on - strand, within Xcc-8004.1152.1at 1090.867 kb on - strand, within Xcc-8004.1152.1at 1091.061 kb on + strand, within Xcc-8004.1152.1at 1091.061 kb on + strand, within Xcc-8004.1152.1at 1091.062 kb on - strand, within Xcc-8004.1152.1at 1091.065 kb on + strand, within Xcc-8004.1152.1at 1091.065 kb on + strand, within Xcc-8004.1152.1at 1091.066 kb on - strand, within Xcc-8004.1152.1at 1091.066 kb on - strand, within Xcc-8004.1152.1at 1091.095 kb on + strand, within Xcc-8004.1152.1at 1091.096 kb on - strand, within Xcc-8004.1152.1at 1091.096 kb on - strand, within Xcc-8004.1152.1at 1091.370 kb on - strandat 1091.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,088,771 - Xcc-8004.1148.1 0.82 -0.8
1,088,831 - +0.2
1,088,831 - +0.9
1,088,831 - +1.7
1,089,657 + +0.1
1,089,657 + -0.2
1,089,711 + -0.2
1,089,712 - -1.6
1,089,816 + Xcc-8004.1151.1 0.12 -1.4
1,089,816 + Xcc-8004.1151.1 0.12 -2.1
1,089,816 + Xcc-8004.1151.1 0.12 -0.9
1,089,816 + Xcc-8004.1151.1 0.12 +1.4
1,089,816 + Xcc-8004.1151.1 0.12 -0.1
1,089,817 - Xcc-8004.1151.1 0.12 -2.3
1,089,817 - Xcc-8004.1151.1 0.12 +0.0
1,089,817 - Xcc-8004.1151.1 0.12 -0.2
1,089,817 - Xcc-8004.1151.1 0.12 -1.0
1,089,817 - Xcc-8004.1151.1 0.12 -1.2
1,089,912 + Xcc-8004.1151.1 0.24 -0.5
1,089,954 + Xcc-8004.1151.1 0.29 -0.4
1,089,954 + Xcc-8004.1151.1 0.29 -0.6
1,089,955 - Xcc-8004.1151.1 0.29 +0.2
1,090,422 + Xcc-8004.1151.1 0.86 -1.2
1,090,479 + -3.5
1,090,480 - -0.4
1,090,480 - +0.6
1,090,480 - -2.4
1,090,483 + -1.2
1,090,484 - +0.7
1,090,484 - -1.9
1,090,535 + -1.9
1,090,535 + +2.2
1,090,536 - +1.7
1,090,627 + Xcc-8004.1152.1 0.10 -3.0
1,090,628 - Xcc-8004.1152.1 0.10 -0.1
1,090,628 - Xcc-8004.1152.1 0.10 -0.8
1,090,637 + Xcc-8004.1152.1 0.11 +1.9
1,090,640 - Xcc-8004.1152.1 0.12 -1.8
1,090,640 - Xcc-8004.1152.1 0.12 +0.4
1,090,640 - Xcc-8004.1152.1 0.12 +1.0
1,090,640 - Xcc-8004.1152.1 0.12 +0.7
1,090,640 - Xcc-8004.1152.1 0.12 -0.7
1,090,654 - Xcc-8004.1152.1 0.13 +0.8
1,090,654 - Xcc-8004.1152.1 0.13 -0.3
1,090,867 - Xcc-8004.1152.1 0.40 -0.8
1,091,061 + Xcc-8004.1152.1 0.63 -2.3
1,091,061 + Xcc-8004.1152.1 0.63 -1.8
1,091,062 - Xcc-8004.1152.1 0.64 -1.1
1,091,065 + Xcc-8004.1152.1 0.64 +1.3
1,091,065 + Xcc-8004.1152.1 0.64 -0.4
1,091,066 - Xcc-8004.1152.1 0.64 +3.0
1,091,066 - Xcc-8004.1152.1 0.64 +1.8
1,091,095 + Xcc-8004.1152.1 0.68 -0.5
1,091,096 - Xcc-8004.1152.1 0.68 +2.7
1,091,096 - Xcc-8004.1152.1 0.68 +0.2
1,091,370 - -0.1
1,091,384 + +0.5

Or see this region's nucleotide sequence