Strain Fitness in Pantoea sp. MT58 around IAI47_20525

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20520 and IAI47_20525 are separated by 362 nucleotidesIAI47_20525 and IAI47_20530 are separated by 55 nucleotides IAI47_20520: IAI47_20520 - maltose/maltodextrin ABC transporter ATP-binding protein MalK, at 353,249 to 354,358 _20520 IAI47_20525: IAI47_20525 - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 354,721 to 355,911 _20525 IAI47_20530: IAI47_20530 - maltose ABC transporter permease MalF, at 355,967 to 357,493 _20530 Position (kb) 354 355 356Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 353.793 kb on + strand, within IAI47_20520at 353.794 kb on - strand, within IAI47_20520at 353.794 kb on - strand, within IAI47_20520at 353.819 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.100 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.260 kb on + strandat 354.260 kb on + strandat 354.260 kb on + strandat 354.261 kb on - strandat 354.283 kb on + strandat 354.295 kb on + strandat 354.295 kb on + strandat 354.296 kb on - strandat 354.341 kb on + strandat 354.341 kb on + strandat 354.342 kb on - strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.374 kb on - strandat 354.381 kb on + strandat 354.381 kb on + strandat 354.381 kb on + strandat 354.381 kb on + strandat 354.382 kb on - strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.423 kb on - strandat 354.577 kb on + strandat 354.578 kb on - strandat 354.578 kb on - strandat 354.589 kb on + strandat 354.635 kb on + strandat 354.636 kb on - strandat 354.636 kb on - strandat 354.667 kb on + strandat 354.668 kb on - strandat 354.721 kb on - strandat 354.721 kb on - strandat 354.847 kb on + strand, within IAI47_20525at 354.848 kb on - strand, within IAI47_20525at 354.897 kb on + strand, within IAI47_20525at 354.898 kb on - strand, within IAI47_20525at 354.898 kb on - strand, within IAI47_20525at 354.937 kb on + strand, within IAI47_20525at 354.937 kb on + strand, within IAI47_20525at 354.975 kb on + strand, within IAI47_20525at 354.975 kb on + strand, within IAI47_20525at 354.975 kb on + strand, within IAI47_20525at 354.976 kb on - strand, within IAI47_20525at 354.976 kb on - strand, within IAI47_20525at 355.102 kb on - strand, within IAI47_20525at 355.148 kb on - strand, within IAI47_20525at 355.148 kb on - strand, within IAI47_20525at 355.206 kb on + strand, within IAI47_20525at 355.207 kb on - strand, within IAI47_20525at 355.240 kb on - strand, within IAI47_20525at 355.240 kb on - strand, within IAI47_20525at 355.240 kb on - strand, within IAI47_20525at 355.261 kb on + strand, within IAI47_20525at 355.261 kb on + strand, within IAI47_20525at 355.261 kb on + strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.297 kb on + strand, within IAI47_20525at 355.297 kb on + strand, within IAI47_20525at 355.298 kb on - strand, within IAI47_20525at 355.324 kb on + strand, within IAI47_20525at 355.426 kb on + strand, within IAI47_20525at 355.426 kb on + strand, within IAI47_20525at 355.426 kb on + strand, within IAI47_20525at 355.427 kb on - strand, within IAI47_20525at 355.427 kb on - strand, within IAI47_20525at 355.476 kb on + strand, within IAI47_20525at 355.530 kb on + strand, within IAI47_20525at 355.645 kb on + strand, within IAI47_20525at 355.646 kb on - strand, within IAI47_20525at 355.646 kb on - strand, within IAI47_20525at 355.646 kb on - strand, within IAI47_20525at 355.646 kb on - strand, within IAI47_20525at 355.646 kb on - strand, within IAI47_20525at 355.678 kb on - strand, within IAI47_20525at 355.680 kb on + strand, within IAI47_20525at 355.680 kb on + strand, within IAI47_20525at 355.680 kb on + strand, within IAI47_20525at 355.681 kb on - strand, within IAI47_20525at 355.681 kb on - strand, within IAI47_20525at 355.747 kb on - strand, within IAI47_20525at 355.882 kb on - strandat 355.909 kb on + strandat 355.909 kb on + strandat 355.909 kb on + strandat 355.909 kb on + strandat 355.910 kb on - strandat 355.910 kb on - strandat 355.910 kb on - strandat 355.910 kb on - strandat 355.912 kb on + strandat 355.912 kb on + strandat 355.913 kb on - strandat 355.913 kb on - strandat 355.913 kb on - strandat 356.043 kb on - strandat 356.043 kb on - strandat 356.052 kb on + strandat 356.052 kb on + strandat 356.052 kb on + strandat 356.053 kb on - strandat 356.053 kb on - strandat 356.060 kb on + strandat 356.060 kb on + strandat 356.061 kb on - strandat 356.075 kb on + strandat 356.075 kb on + strandat 356.076 kb on - strandat 356.076 kb on - strandat 356.076 kb on - strandat 356.076 kb on - strandat 356.131 kb on + strand, within IAI47_20530at 356.131 kb on + strand, within IAI47_20530at 356.132 kb on - strand, within IAI47_20530at 356.144 kb on + strand, within IAI47_20530at 356.145 kb on - strand, within IAI47_20530at 356.156 kb on + strand, within IAI47_20530at 356.156 kb on + strand, within IAI47_20530at 356.156 kb on + strand, within IAI47_20530at 356.156 kb on + strand, within IAI47_20530at 356.156 kb on + strand, within IAI47_20530at 356.157 kb on - strand, within IAI47_20530at 356.157 kb on - strand, within IAI47_20530at 356.162 kb on + strand, within IAI47_20530at 356.222 kb on - strand, within IAI47_20530at 356.230 kb on + strand, within IAI47_20530at 356.230 kb on + strand, within IAI47_20530at 356.237 kb on + strand, within IAI47_20530at 356.237 kb on + strand, within IAI47_20530at 356.237 kb on + strand, within IAI47_20530at 356.237 kb on + strand, within IAI47_20530at 356.237 kb on + strand, within IAI47_20530at 356.237 kb on + strand, within IAI47_20530at 356.237 kb on + strand, within IAI47_20530at 356.237 kb on + strand, within IAI47_20530at 356.237 kb on + strand, within IAI47_20530at 356.238 kb on - strand, within IAI47_20530at 356.238 kb on - strand, within IAI47_20530at 356.238 kb on - strand, within IAI47_20530at 356.238 kb on - strand, within IAI47_20530at 356.242 kb on + strand, within IAI47_20530at 356.242 kb on + strand, within IAI47_20530at 356.242 kb on + strand, within IAI47_20530at 356.242 kb on + strand, within IAI47_20530at 356.242 kb on + strand, within IAI47_20530at 356.242 kb on + strand, within IAI47_20530at 356.242 kb on + strand, within IAI47_20530at 356.242 kb on + strand, within IAI47_20530at 356.242 kb on + strand, within IAI47_20530at 356.242 kb on + strand, within IAI47_20530at 356.243 kb on - strand, within IAI47_20530at 356.243 kb on - strand, within IAI47_20530at 356.243 kb on - strand, within IAI47_20530at 356.243 kb on - strand, within IAI47_20530at 356.249 kb on - strand, within IAI47_20530at 356.280 kb on + strand, within IAI47_20530at 356.280 kb on + strand, within IAI47_20530at 356.280 kb on + strand, within IAI47_20530at 356.294 kb on - strand, within IAI47_20530at 356.473 kb on + strand, within IAI47_20530at 356.580 kb on - strand, within IAI47_20530at 356.657 kb on + strand, within IAI47_20530at 356.657 kb on + strand, within IAI47_20530at 356.657 kb on + strand, within IAI47_20530at 356.658 kb on - strand, within IAI47_20530at 356.680 kb on + strand, within IAI47_20530at 356.680 kb on + strand, within IAI47_20530at 356.680 kb on + strand, within IAI47_20530at 356.680 kb on + strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.681 kb on - strand, within IAI47_20530at 356.700 kb on + strand, within IAI47_20530at 356.701 kb on - strand, within IAI47_20530at 356.701 kb on - strand, within IAI47_20530at 356.701 kb on - strand, within IAI47_20530at 356.713 kb on + strand, within IAI47_20530at 356.714 kb on - strand, within IAI47_20530at 356.752 kb on + strand, within IAI47_20530at 356.752 kb on + strand, within IAI47_20530at 356.752 kb on + strand, within IAI47_20530at 356.752 kb on + strand, within IAI47_20530at 356.752 kb on + strand, within IAI47_20530at 356.753 kb on - strand, within IAI47_20530at 356.787 kb on + strand, within IAI47_20530

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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353,793 + IAI47_20520 0.49 +0.2
353,794 - IAI47_20520 0.49 -0.7
353,794 - IAI47_20520 0.49 -0.9
353,819 - IAI47_20520 0.51 -0.9
354,074 - IAI47_20520 0.74 -0.1
354,074 - IAI47_20520 0.74 -0.9
354,074 - IAI47_20520 0.74 -0.9
354,100 - IAI47_20520 0.77 -0.3
354,109 - IAI47_20520 0.77 +2.2
354,109 - IAI47_20520 0.77 +1.4
354,109 - IAI47_20520 0.77 -0.1
354,109 - IAI47_20520 0.77 +0.1
354,260 + -1.4
354,260 + -0.8
354,260 + +0.4
354,261 - -1.6
354,283 + +0.3
354,295 + +0.3
354,295 + -0.5
354,296 - +0.1
354,341 + -0.3
354,341 + +0.2
354,342 - -2.9
354,373 + +0.6
354,373 + -0.7
354,373 + +0.7
354,373 + -0.5
354,373 + -1.0
354,373 + +0.6
354,374 - -1.1
354,381 + +1.5
354,381 + +1.7
354,381 + -0.1
354,381 + +0.7
354,382 - +1.1
354,422 + +0.9
354,422 + +1.2
354,422 + +0.3
354,422 + +0.5
354,422 + -1.4
354,423 - +0.2
354,577 + +0.1
354,578 - -0.9
354,578 - +1.6
354,589 + +0.6
354,635 + +1.2
354,636 - +0.5
354,636 - +1.4
354,667 + +1.5
354,668 - -1.1
354,721 - -0.9
354,721 - +0.1
354,847 + IAI47_20525 0.11 +0.1
354,848 - IAI47_20525 0.11 +0.4
354,897 + IAI47_20525 0.15 +0.7
354,898 - IAI47_20525 0.15 -0.8
354,898 - IAI47_20525 0.15 -0.5
354,937 + IAI47_20525 0.18 -1.2
354,937 + IAI47_20525 0.18 +1.4
354,975 + IAI47_20525 0.21 -0.1
354,975 + IAI47_20525 0.21 +1.0
354,975 + IAI47_20525 0.21 -0.5
354,976 - IAI47_20525 0.21 +0.8
354,976 - IAI47_20525 0.21 -1.9
355,102 - IAI47_20525 0.32 +0.9
355,148 - IAI47_20525 0.36 -0.1
355,148 - IAI47_20525 0.36 -2.5
355,206 + IAI47_20525 0.41 -0.1
355,207 - IAI47_20525 0.41 +0.4
355,240 - IAI47_20525 0.44 -1.4
355,240 - IAI47_20525 0.44 +2.0
355,240 - IAI47_20525 0.44 -0.6
355,261 + IAI47_20525 0.45 -0.7
355,261 + IAI47_20525 0.45 -1.3
355,261 + IAI47_20525 0.45 -0.4
355,262 - IAI47_20525 0.45 -2.2
355,262 - IAI47_20525 0.45 +0.1
355,262 - IAI47_20525 0.45 -0.6
355,262 - IAI47_20525 0.45 -0.3
355,297 + IAI47_20525 0.48 +0.1
355,297 + IAI47_20525 0.48 +0.8
355,298 - IAI47_20525 0.48 -1.0
355,324 + IAI47_20525 0.51 +0.6
355,426 + IAI47_20525 0.59 +2.0
355,426 + IAI47_20525 0.59 -0.9
355,426 + IAI47_20525 0.59 +0.5
355,427 - IAI47_20525 0.59 +1.7
355,427 - IAI47_20525 0.59 +1.2
355,476 + IAI47_20525 0.63 +0.6
355,530 + IAI47_20525 0.68 -1.0
355,645 + IAI47_20525 0.78 +1.5
355,646 - IAI47_20525 0.78 -0.2
355,646 - IAI47_20525 0.78 -2.5
355,646 - IAI47_20525 0.78 +0.3
355,646 - IAI47_20525 0.78 -1.4
355,646 - IAI47_20525 0.78 +0.6
355,678 - IAI47_20525 0.80 -0.2
355,680 + IAI47_20525 0.81 -0.7
355,680 + IAI47_20525 0.81 -1.4
355,680 + IAI47_20525 0.81 -1.2
355,681 - IAI47_20525 0.81 -1.3
355,681 - IAI47_20525 0.81 -0.2
355,747 - IAI47_20525 0.86 +0.0
355,882 - -1.1
355,909 + +0.6
355,909 + +1.2
355,909 + -1.0
355,909 + -0.0
355,910 - +0.3
355,910 - +1.2
355,910 - -0.2
355,910 - +0.3
355,912 + +1.5
355,912 + +0.2
355,913 - -1.1
355,913 - -0.5
355,913 - +0.5
356,043 - +2.3
356,043 - -0.4
356,052 + -0.7
356,052 + -0.2
356,052 + +0.0
356,053 - +0.7
356,053 - -0.9
356,060 + +0.4
356,060 + +0.6
356,061 - +1.2
356,075 + +1.9
356,075 + -0.9
356,076 - -0.3
356,076 - +0.5
356,076 - -0.1
356,076 - +3.4
356,131 + IAI47_20530 0.11 -1.0
356,131 + IAI47_20530 0.11 +0.7
356,132 - IAI47_20530 0.11 +0.3
356,144 + IAI47_20530 0.12 -1.3
356,145 - IAI47_20530 0.12 -2.6
356,156 + IAI47_20530 0.12 -0.6
356,156 + IAI47_20530 0.12 -0.9
356,156 + IAI47_20530 0.12 -1.5
356,156 + IAI47_20530 0.12 +1.2
356,156 + IAI47_20530 0.12 -0.1
356,157 - IAI47_20530 0.12 +1.4
356,157 - IAI47_20530 0.12 +0.4
356,162 + IAI47_20530 0.13 +1.0
356,222 - IAI47_20530 0.17 +0.4
356,230 + IAI47_20530 0.17 -0.8
356,230 + IAI47_20530 0.17 +0.6
356,237 + IAI47_20530 0.18 +0.3
356,237 + IAI47_20530 0.18 +1.4
356,237 + IAI47_20530 0.18 -1.2
356,237 + IAI47_20530 0.18 +0.6
356,237 + IAI47_20530 0.18 +1.1
356,237 + IAI47_20530 0.18 -0.6
356,237 + IAI47_20530 0.18 +0.2
356,237 + IAI47_20530 0.18 -0.4
356,237 + IAI47_20530 0.18 +1.2
356,238 - IAI47_20530 0.18 +1.8
356,238 - IAI47_20530 0.18 -1.1
356,238 - IAI47_20530 0.18 +0.9
356,238 - IAI47_20530 0.18 +0.5
356,242 + IAI47_20530 0.18 +1.6
356,242 + IAI47_20530 0.18 -0.0
356,242 + IAI47_20530 0.18 -0.4
356,242 + IAI47_20530 0.18 +1.1
356,242 + IAI47_20530 0.18 +0.5
356,242 + IAI47_20530 0.18 -0.8
356,242 + IAI47_20530 0.18 +0.3
356,242 + IAI47_20530 0.18 +1.3
356,242 + IAI47_20530 0.18 +1.8
356,242 + IAI47_20530 0.18 -0.2
356,243 - IAI47_20530 0.18 -0.2
356,243 - IAI47_20530 0.18 -1.7
356,243 - IAI47_20530 0.18 +0.9
356,243 - IAI47_20530 0.18 +0.8
356,249 - IAI47_20530 0.18 -0.6
356,280 + IAI47_20530 0.20 +0.1
356,280 + IAI47_20530 0.20 +1.0
356,280 + IAI47_20530 0.20 +1.6
356,294 - IAI47_20530 0.21 +0.2
356,473 + IAI47_20530 0.33 +1.2
356,580 - IAI47_20530 0.40 +1.0
356,657 + IAI47_20530 0.45 +0.2
356,657 + IAI47_20530 0.45 -0.0
356,657 + IAI47_20530 0.45 +0.4
356,658 - IAI47_20530 0.45 +0.9
356,680 + IAI47_20530 0.47 +1.2
356,680 + IAI47_20530 0.47 +1.6
356,680 + IAI47_20530 0.47 -0.1
356,680 + IAI47_20530 0.47 +1.3
356,681 - IAI47_20530 0.47 +1.1
356,681 - IAI47_20530 0.47 -0.1
356,681 - IAI47_20530 0.47 +1.4
356,681 - IAI47_20530 0.47 -1.1
356,681 - IAI47_20530 0.47 +2.6
356,681 - IAI47_20530 0.47 +0.7
356,681 - IAI47_20530 0.47 -0.2
356,681 - IAI47_20530 0.47 +1.0
356,681 - IAI47_20530 0.47 -1.7
356,681 - IAI47_20530 0.47 -0.7
356,681 - IAI47_20530 0.47 -1.0
356,681 - IAI47_20530 0.47 +2.0
356,681 - IAI47_20530 0.47 -1.7
356,700 + IAI47_20530 0.48 +0.7
356,701 - IAI47_20530 0.48 +0.0
356,701 - IAI47_20530 0.48 +0.3
356,701 - IAI47_20530 0.48 +0.5
356,713 + IAI47_20530 0.49 +2.6
356,714 - IAI47_20530 0.49 +0.3
356,752 + IAI47_20530 0.51 +0.8
356,752 + IAI47_20530 0.51 -0.3
356,752 + IAI47_20530 0.51 -0.6
356,752 + IAI47_20530 0.51 -0.8
356,752 + IAI47_20530 0.51 +0.4
356,753 - IAI47_20530 0.51 -0.6
356,787 + IAI47_20530 0.54 +0.1

Or see this region's nucleotide sequence