Strain Fitness in Pantoea sp. MT58 around IAI47_15130

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,189,352	+		IAI47_15125	0.35	-1.7
3,189,352	+		IAI47_15125	0.35	-0.2
3,189,352	+		IAI47_15125	0.35	+0.2
3,189,353	-		IAI47_15125	0.35	-0.9
3,189,353	-		IAI47_15125	0.35	-0.2
3,189,377	+		IAI47_15125	0.37	-1.9
3,189,378	-		IAI47_15125	0.37	-0.9
3,189,392	+		IAI47_15125	0.38	+1.2
3,189,392	+		IAI47_15125	0.38	-2.5
3,189,393	-		IAI47_15125	0.39	+0.7
3,189,398	+		IAI47_15125	0.39	+0.0
3,189,398	+		IAI47_15125	0.39	+0.9
3,189,398	+		IAI47_15125	0.39	+2.2
3,189,398	+		IAI47_15125	0.39	-0.7
3,189,399	-		IAI47_15125	0.39	-0.2
3,189,399	-		IAI47_15125	0.39	+0.2
3,189,399	-		IAI47_15125	0.39	+0.0
3,189,429	+		IAI47_15125	0.42	-0.3
3,189,429	+		IAI47_15125	0.42	+1.3
3,189,430	-		IAI47_15125	0.42	-1.1
3,189,430	-		IAI47_15125	0.42	+0.1
3,189,430	-		IAI47_15125	0.42	-1.3
3,189,430	-		IAI47_15125	0.42	+1.4
3,189,430	-		IAI47_15125	0.42	-1.6
3,189,434	+		IAI47_15125	0.42	-0.4
3,189,440	+		IAI47_15125	0.43	+0.1
3,189,440	+		IAI47_15125	0.43	-0.2
3,189,441	-		IAI47_15125	0.43	+0.4
3,189,441	-		IAI47_15125	0.43	-0.1
3,189,441	-		IAI47_15125	0.43	-1.1
3,189,441	-		IAI47_15125	0.43	+1.3
3,189,441	-		IAI47_15125	0.43	-1.2
3,189,441	-		IAI47_15125	0.43	-0.8
3,189,441	-		IAI47_15125	0.43	-0.6
3,189,483	+		IAI47_15125	0.47	-0.2
3,189,483	+		IAI47_15125	0.47	+0.5
3,189,484	-		IAI47_15125	0.47	-2.8
3,189,522	-		IAI47_15125	0.50	-1.0
3,189,522	-		IAI47_15125	0.50	-0.9
3,189,527	+		IAI47_15125	0.51	-0.3
3,189,527	+		IAI47_15125	0.51	+0.3
3,189,527	+		IAI47_15125	0.51	+1.1
3,189,527	+		IAI47_15125	0.51	-0.1
3,189,528	-		IAI47_15125	0.51	-0.1
3,189,528	-		IAI47_15125	0.51	-0.6
3,189,528	-		IAI47_15125	0.51	+0.7
3,189,528	-		IAI47_15125	0.51	-0.1
3,189,528	-		IAI47_15125	0.51	-0.8
3,189,528	-		IAI47_15125	0.51	+0.4
3,189,528	-		IAI47_15125	0.51	-0.2
3,189,530	+		IAI47_15125	0.51	-0.7
3,189,570	+		IAI47_15125	0.54	-0.3
3,189,571	-		IAI47_15125	0.55	-1.7
3,189,571	-		IAI47_15125	0.55	-2.3
3,189,652	-		IAI47_15125	0.62	+2.2
3,189,652	-		IAI47_15125	0.62	+0.8
3,189,696	+		IAI47_15125	0.66	-0.6
3,189,696	+		IAI47_15125	0.66	-0.3
3,189,696	+		IAI47_15125	0.66	+0.5
3,189,696	+		IAI47_15125	0.66	+1.0
3,189,696	+		IAI47_15125	0.66	-0.5
3,189,696	+		IAI47_15125	0.66	+0.7
3,189,696	+		IAI47_15125	0.66	+1.5
3,189,697	-		IAI47_15125	0.66	+0.1
3,189,697	-		IAI47_15125	0.66	-0.7
3,189,704	+		IAI47_15125	0.66	+0.1
3,189,704	+		IAI47_15125	0.66	+0.2
3,189,704	+		IAI47_15125	0.66	+1.3
3,189,704	+		IAI47_15125	0.66	-0.7
3,189,704	+		IAI47_15125	0.66	+0.1
3,189,704	+		IAI47_15125	0.66	-0.1
3,189,704	+		IAI47_15125	0.66	+2.6
3,189,704	+		IAI47_15125	0.66	-1.0
3,189,705	-		IAI47_15125	0.67	-0.0
3,189,705	-		IAI47_15125	0.67	-0.6
3,189,705	-		IAI47_15125	0.67	-0.1
3,189,705	-		IAI47_15125	0.67	-0.9
3,189,714	+		IAI47_15125	0.67	-1.8
3,189,714	+		IAI47_15125	0.67	-2.9
3,189,715	-		IAI47_15125	0.67	-0.1
3,189,715	-		IAI47_15125	0.67	+0.9
3,189,715	-		IAI47_15125	0.67	+2.3
3,189,729	+		IAI47_15125	0.69	-1.1
3,189,729	+		IAI47_15125	0.69	-0.9
3,189,729	+		IAI47_15125	0.69	+0.3
3,189,730	-		IAI47_15125	0.69	-0.4
3,189,730	-		IAI47_15125	0.69	+0.0
3,189,743	+		IAI47_15125	0.70	-0.7
3,189,743	+		IAI47_15125	0.70	-0.6
3,189,743	+		IAI47_15125	0.70	-0.4
3,189,744	-		IAI47_15125	0.70	+4.6
3,189,746	+		IAI47_15125	0.70	-0.3
3,189,746	+		IAI47_15125	0.70	+0.1
3,189,746	+		IAI47_15125	0.70	+1.2
3,189,747	-		IAI47_15125	0.70	+0.3
3,189,837	+		IAI47_15125	0.78	-0.6
3,189,837	+		IAI47_15125	0.78	+0.1
3,189,838	-		IAI47_15125	0.79	-1.5
3,189,873	+		IAI47_15125	0.82	+1.3
3,189,873	+		IAI47_15125	0.82	+0.1
3,189,874	-		IAI47_15125	0.82	+0.1
3,189,874	-		IAI47_15125	0.82	-0.3
3,189,874	-		IAI47_15125	0.82	-0.6
3,189,877	+		IAI47_15125	0.82	+0.3
3,189,877	+		IAI47_15125	0.82	-0.7
3,189,877	+		IAI47_15125	0.82	-0.5
3,189,877	+		IAI47_15125	0.82	-2.8
3,189,877	+		IAI47_15125	0.82	+0.6
3,189,877	+		IAI47_15125	0.82	+0.9
3,189,877	+		IAI47_15125	0.82	+0.2
3,189,877	+		IAI47_15125	0.82	+1.3
3,189,878	-		IAI47_15125	0.82	+0.5
3,189,878	-		IAI47_15125	0.82	+0.8
3,189,878	-		IAI47_15125	0.82	-0.8
3,189,878	-		IAI47_15125	0.82	+0.3
3,189,878	-		IAI47_15125	0.82	-0.6
3,189,896	+		IAI47_15125	0.84	+0.9
3,189,897	-		IAI47_15125	0.84	+0.4
3,189,909	-		IAI47_15125	0.85	+0.5
3,189,933	+		IAI47_15125	0.87	+0.1
3,189,933	+		IAI47_15125	0.87	-0.7
3,189,933	+		IAI47_15125	0.87	-0.9
3,189,934	-		IAI47_15125	0.87	+0.6
3,189,934	-		IAI47_15125	0.87	-1.8
3,189,934	-		IAI47_15125	0.87	+0.2
3,189,934	-		IAI47_15125	0.87	-1.0
3,189,934	-		IAI47_15125	0.87	+0.5
3,189,934	-		IAI47_15125	0.87	-2.4
3,189,934	-		IAI47_15125	0.87	+2.0
3,189,935	+		IAI47_15125	0.87	+0.3
3,189,936	-		IAI47_15125	0.87	-0.6
3,189,954	+		IAI47_15125	0.89	-0.8
3,189,954	+		IAI47_15125	0.89	-1.0
3,189,954	+		IAI47_15125	0.89	-0.1
3,189,954	+		IAI47_15125	0.89	-0.7
3,189,955	-		IAI47_15125	0.89	-0.8
3,189,955	-		IAI47_15125	0.89	-0.2
3,189,955	-		IAI47_15125	0.89	+0.5
3,189,957	+		IAI47_15125	0.89	+0.1
3,189,957	+		IAI47_15125	0.89	+1.5
3,189,957	+		IAI47_15125	0.89	+0.7
3,189,957	+		IAI47_15125	0.89	-0.4
3,189,958	-		IAI47_15125	0.89	-0.7
3,189,958	-		IAI47_15125	0.89	-0.9
3,189,958	-		IAI47_15125	0.89	+1.0
3,189,958	-		IAI47_15125	0.89	-0.3
3,189,958	-		IAI47_15125	0.89	-0.2
3,189,958	-		IAI47_15125	0.89	-1.0
3,189,971	+				+1.7
3,189,972	-				-1.3
3,189,972	-				-1.0
3,189,990	+				+0.3
3,189,991	-				-0.9
3,190,032	-				-1.4
3,190,065	+				-0.5
3,190,065	+				-1.5
3,190,065	+				-0.3
3,190,066	-				-0.4
3,190,066	-				-0.6
3,190,066	-				-0.4
3,190,066	-				-0.5
3,190,122	+				+0.8
3,190,316	+				+0.3
3,190,324	+				-0.4
3,190,324	+				+0.4
3,190,324	+				-1.1
3,190,324	+				-0.9
3,190,325	-				-1.9
3,190,325	-				+1.9
3,190,325	-				-1.0
3,190,329	+				-0.0
3,190,329	+				-0.0
3,190,329	+				-0.7
3,190,329	+				+0.8
3,190,330	-				-1.2
3,190,330	-				+0.7
3,190,335	-				+0.1
3,190,438	+		IAI47_15130	0.25	+0.2
3,190,507	-		IAI47_15130	0.43	+0.8
3,190,526	+		IAI47_15130	0.47	-0.5
3,190,526	+		IAI47_15130	0.47	+0.5
3,190,526	+		IAI47_15130	0.47	+2.3
3,190,526	+		IAI47_15130	0.47	-0.3
3,190,526	+		IAI47_15130	0.47	+0.2
3,190,526	+		IAI47_15130	0.47	-0.6
3,190,527	-		IAI47_15130	0.48	+0.7
3,190,527	-		IAI47_15130	0.48	+2.7
3,190,527	-		IAI47_15130	0.48	-0.0
3,190,527	-		IAI47_15130	0.48	-0.1
3,190,527	-		IAI47_15130	0.48	+0.3
3,190,527	-		IAI47_15130	0.48	+1.1
3,190,527	-		IAI47_15130	0.48	+0.6
3,190,527	-		IAI47_15130	0.48	+1.1
3,190,527	-		IAI47_15130	0.48	+0.6
3,190,527	-		IAI47_15130	0.48	+0.4
3,190,527	-		IAI47_15130	0.48	+0.4
3,190,527	-		IAI47_15130	0.48	+0.1
3,190,532	+		IAI47_15130	0.49	+0.3
3,190,532	+		IAI47_15130	0.49	-1.0
3,190,532	+		IAI47_15130	0.49	-0.5
3,190,532	+		IAI47_15130	0.49	-0.6
3,190,532	+		IAI47_15130	0.49	-0.4
3,190,532	+		IAI47_15130	0.49	+2.1
3,190,532	+		IAI47_15130	0.49	+2.1
3,190,532	+		IAI47_15130	0.49	+0.1
3,190,532	+		IAI47_15130	0.49	+0.9
3,190,532	+		IAI47_15130	0.49	+0.2
3,190,532	+		IAI47_15130	0.49	+1.3
3,190,533	-		IAI47_15130	0.49	+0.1
3,190,533	-		IAI47_15130	0.49	+0.3
3,190,533	-		IAI47_15130	0.49	+1.7
3,190,533	-		IAI47_15130	0.49	+0.5
3,190,533	-		IAI47_15130	0.49	+1.2
3,190,533	-		IAI47_15130	0.49	+0.7
3,190,533	-		IAI47_15130	0.49	+0.9
3,190,536	+		IAI47_15130	0.50	+2.0
3,190,536	+		IAI47_15130	0.50	+0.8
3,190,536	+		IAI47_15130	0.50	-0.6
3,190,536	+		IAI47_15130	0.50	-1.1
3,190,536	+		IAI47_15130	0.50	-0.1
3,190,536	+		IAI47_15130	0.50	+0.7
3,190,536	+		IAI47_15130	0.50	+0.8
3,190,536	+		IAI47_15130	0.50	+1.1
3,190,536	+		IAI47_15130	0.50	+0.5
3,190,536	+		IAI47_15130	0.50	+1.6
3,190,536	+		IAI47_15130	0.50	-1.2
3,190,537	-		IAI47_15130	0.50	+0.0
3,190,537	-		IAI47_15130	0.50	+1.3
3,190,537	-		IAI47_15130	0.50	+0.6
3,190,537	-		IAI47_15130	0.50	+0.4
3,190,537	-		IAI47_15130	0.50	-1.5
3,190,537	-		IAI47_15130	0.50	+0.3
3,190,671	+		IAI47_15130	0.83	-0.8
3,190,671	+		IAI47_15130	0.83	+1.4
3,190,671	+		IAI47_15130	0.83	+0.9
3,190,671	+		IAI47_15130	0.83	+0.4
3,190,672	-		IAI47_15130	0.84	+2.0
3,190,672	-		IAI47_15130	0.84	-1.4
3,190,672	-		IAI47_15130	0.84	+0.9
3,190,673	+		IAI47_15130	0.84	+0.7
3,190,673	+		IAI47_15130	0.84	-0.3
3,190,673	+		IAI47_15130	0.84	+0.4
3,190,673	+		IAI47_15130	0.84	-0.2
3,190,673	+		IAI47_15130	0.84	-0.2
3,190,674	-		IAI47_15130	0.84	-0.6
3,190,674	-		IAI47_15130	0.84	+1.6
3,190,698	+				-0.6
3,190,729	+				-1.3
3,190,729	+				+0.5
3,190,751	-				+0.2
3,190,751	-				+1.4
3,190,764	+				+0.4
3,190,765	-				-0.1
3,190,766	+				-0.0
3,190,766	+				-0.1
3,190,766	+				+1.1
3,190,766	+				-0.0
3,190,766	+				+0.7
3,190,766	+				+2.0
3,190,766	+				-0.8
3,190,767	-				-0.1
3,190,767	-				-0.3
3,190,767	-				-0.6
3,190,767	-				+1.0
3,190,767	-				+0.1
3,190,767	-				+0.5
3,190,767	-				-1.5
3,190,767	-				-0.6
3,190,767	-				+0.8
3,190,800	+				+0.1
3,190,800	+				+0.4
3,190,800	+				+0.5
3,190,801	-				-0.8
3,190,801	-				+1.2
3,190,827	-				+0.4
3,190,827	-				+0.3
3,190,827	-				-0.3
3,190,827	-				+0.7
3,190,827	-				-2.3
3,190,827	-				-0.8
3,190,836	-				-0.6
3,190,863	+				-1.9
3,190,863	+				-0.1
3,190,863	+				-2.7
3,190,863	+				-0.4
3,190,863	+				-0.3
3,190,863	+				+0.5
3,190,863	+				+0.7
3,190,863	+				-0.5
3,190,863	+				+0.4
3,190,864	-				+0.8
3,190,864	-				-0.6
3,190,864	-				+0.3
3,190,864	-				+1.9
3,190,864	-				+0.5
3,190,869	+				-0.5
3,190,870	-				+0.5
3,190,877	-				+0.8
3,191,014	-				+3.1
3,191,057	+		IAI47_15135	0.13	-0.7
3,191,095	+		IAI47_15135	0.16	-0.1
3,191,096	-		IAI47_15135	0.16	+0.1
3,191,109	+		IAI47_15135	0.17	+1.1
3,191,164	-		IAI47_15135	0.22	-0.5
3,191,184	+		IAI47_15135	0.23	-0.8
3,191,184	+		IAI47_15135	0.23	+0.9
3,191,184	+		IAI47_15135	0.23	+2.4
3,191,185	-		IAI47_15135	0.23	+0.9
3,191,185	-		IAI47_15135	0.23	+0.7
3,191,185	-		IAI47_15135	0.23	+0.7
3,191,185	-		IAI47_15135	0.23	-0.5
3,191,190	+		IAI47_15135	0.24	+0.4
3,191,190	+		IAI47_15135	0.24	+0.5
3,191,190	+		IAI47_15135	0.24	+0.5
3,191,190	+		IAI47_15135	0.24	+1.1
3,191,190	+		IAI47_15135	0.24	-0.0
3,191,190	+		IAI47_15135	0.24	+3.2
3,191,190	+		IAI47_15135	0.24	-0.2
3,191,190	+		IAI47_15135	0.24	+1.0
3,191,190	+		IAI47_15135	0.24	-0.1
3,191,190	+		IAI47_15135	0.24	+1.0
3,191,190	+		IAI47_15135	0.24	+1.3
3,191,190	+		IAI47_15135	0.24	+0.6
3,191,191	-		IAI47_15135	0.24	+0.8
3,191,191	-		IAI47_15135	0.24	+1.0
3,191,191	-		IAI47_15135	0.24	+1.7
3,191,191	-		IAI47_15135	0.24	+1.5
3,191,191	-		IAI47_15135	0.24	+1.3
3,191,191	-		IAI47_15135	0.24	+1.1
3,191,191	-		IAI47_15135	0.24	+1.1
3,191,191	-		IAI47_15135	0.24	+0.4
3,191,191	-		IAI47_15135	0.24	+0.6
3,191,191	-		IAI47_15135	0.24	-1.4
3,191,192	+		IAI47_15135	0.24	+0.9
3,191,192	+		IAI47_15135	0.24	-1.7
3,191,192	+		IAI47_15135	0.24	-0.5
3,191,192	+		IAI47_15135	0.24	-0.3
3,191,192	+		IAI47_15135	0.24	+1.6
3,191,192	+		IAI47_15135	0.24	-0.7
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