Strain Fitness in Marinobacter adhaerens HP15 around HP15_65

Experiment: m.b. Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_64 and HP15_65 overlap by 4 nucleotidesHP15_65 and HP15_66 are separated by 316 nucleotides HP15_64: HP15_64 - catalytic domain of components of various dehydrogenase complexes, at 67,793 to 69,091 _64 HP15_65: HP15_65 - dihydrolipoamide dehydrogenase, at 69,088 to 70,473 _65 HP15_66: HP15_66 - adenylate cyclase, at 70,790 to 72,199 _66 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.136 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.264 kb on + strand, within HP15_64at 68.370 kb on - strand, within HP15_64at 68.577 kb on - strand, within HP15_64at 68.686 kb on + strand, within HP15_64at 68.696 kb on + strand, within HP15_64at 68.702 kb on + strand, within HP15_64at 68.702 kb on + strand, within HP15_64at 68.702 kb on + strand, within HP15_64at 68.717 kb on + strand, within HP15_64at 68.736 kb on + strand, within HP15_64at 68.752 kb on - strand, within HP15_64at 68.757 kb on + strand, within HP15_64at 68.762 kb on + strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.775 kb on - strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.780 kb on - strand, within HP15_64at 68.784 kb on - strand, within HP15_64at 68.784 kb on - strand, within HP15_64at 68.784 kb on - strand, within HP15_64at 68.784 kb on - strand, within HP15_64at 68.794 kb on + strand, within HP15_64at 68.881 kb on + strand, within HP15_64at 68.929 kb on + strand, within HP15_64at 68.936 kb on + strand, within HP15_64at 68.969 kb on + strandat 69.021 kb on - strandat 69.046 kb on + strandat 69.099 kb on + strandat 69.129 kb on - strandat 69.165 kb on + strandat 69.176 kb on - strandat 69.187 kb on - strandat 69.207 kb on - strandat 69.282 kb on + strand, within HP15_65at 69.282 kb on + strand, within HP15_65at 69.290 kb on - strand, within HP15_65at 69.353 kb on - strand, within HP15_65at 69.401 kb on - strand, within HP15_65at 69.440 kb on - strand, within HP15_65at 69.478 kb on + strand, within HP15_65at 69.541 kb on - strand, within HP15_65at 69.595 kb on + strand, within HP15_65at 69.595 kb on - strand, within HP15_65at 69.613 kb on - strand, within HP15_65at 69.625 kb on - strand, within HP15_65at 69.651 kb on - strand, within HP15_65at 69.652 kb on + strand, within HP15_65at 69.720 kb on + strand, within HP15_65at 69.728 kb on - strand, within HP15_65at 69.775 kb on - strand, within HP15_65at 69.775 kb on - strand, within HP15_65at 69.815 kb on - strand, within HP15_65at 69.842 kb on + strand, within HP15_65at 69.843 kb on + strand, within HP15_65at 69.852 kb on - strand, within HP15_65at 69.913 kb on + strand, within HP15_65at 69.921 kb on - strand, within HP15_65at 69.945 kb on + strand, within HP15_65at 69.945 kb on + strand, within HP15_65at 69.945 kb on + strand, within HP15_65at 69.962 kb on + strand, within HP15_65at 70.044 kb on - strand, within HP15_65at 70.069 kb on + strand, within HP15_65at 70.076 kb on - strand, within HP15_65at 70.133 kb on + strand, within HP15_65at 70.178 kb on - strand, within HP15_65at 70.179 kb on + strand, within HP15_65at 70.179 kb on + strand, within HP15_65at 70.223 kb on - strand, within HP15_65at 70.228 kb on - strand, within HP15_65at 70.266 kb on + strand, within HP15_65at 70.527 kb on - strandat 70.527 kb on - strandat 70.557 kb on - strandat 70.637 kb on + strandat 70.645 kb on - strandat 70.753 kb on - strandat 70.758 kb on - strandat 70.765 kb on + strandat 70.923 kb on - strandat 71.050 kb on - strand, within HP15_66at 71.079 kb on - strand, within HP15_66at 71.121 kb on + strand, within HP15_66at 71.126 kb on + strand, within HP15_66at 71.188 kb on - strand, within HP15_66at 71.222 kb on - strand, within HP15_66at 71.236 kb on + strand, within HP15_66at 71.303 kb on + strand, within HP15_66at 71.328 kb on + strand, within HP15_66at 71.335 kb on - strand, within HP15_66at 71.335 kb on - strand, within HP15_66at 71.352 kb on + strand, within HP15_66at 71.386 kb on + strand, within HP15_66at 71.423 kb on + strand, within HP15_66at 71.446 kb on - strand, within HP15_66

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
remove
68,136 + HP15_64 0.26 -0.9
68,167 + HP15_64 0.29 +0.9
68,167 + HP15_64 0.29 +0.8
68,167 + HP15_64 0.29 -3.3
68,167 + HP15_64 0.29 -1.7
68,167 + HP15_64 0.29 +0.0
68,175 - HP15_64 0.29 +1.5
68,175 - HP15_64 0.29 +0.3
68,175 - HP15_64 0.29 -1.6
68,175 - HP15_64 0.29 +0.4
68,264 + HP15_64 0.36 +1.2
68,370 - HP15_64 0.44 +0.7
68,577 - HP15_64 0.60 +0.9
68,686 + HP15_64 0.69 +0.2
68,696 + HP15_64 0.70 -1.0
68,702 + HP15_64 0.70 -1.2
68,702 + HP15_64 0.70 +0.7
68,702 + HP15_64 0.70 +0.0
68,717 + HP15_64 0.71 -0.1
68,736 + HP15_64 0.73 -0.2
68,752 - HP15_64 0.74 +0.8
68,757 + HP15_64 0.74 +0.0
68,762 + HP15_64 0.75 +1.4
68,762 - HP15_64 0.75 +0.2
68,762 - HP15_64 0.75 +0.5
68,762 - HP15_64 0.75 +0.2
68,762 - HP15_64 0.75 +0.2
68,762 - HP15_64 0.75 +0.2
68,762 - HP15_64 0.75 -0.1
68,775 - HP15_64 0.76 -1.1
68,776 + HP15_64 0.76 -0.2
68,776 + HP15_64 0.76 -2.2
68,776 + HP15_64 0.76 +0.7
68,776 + HP15_64 0.76 +0.2
68,776 + HP15_64 0.76 +0.3
68,776 + HP15_64 0.76 -0.2
68,780 - HP15_64 0.76 -1.8
68,784 - HP15_64 0.76 -0.3
68,784 - HP15_64 0.76 -1.4
68,784 - HP15_64 0.76 +0.0
68,784 - HP15_64 0.76 -1.0
68,794 + HP15_64 0.77 -0.1
68,881 + HP15_64 0.84 +0.4
68,929 + HP15_64 0.87 -1.5
68,936 + HP15_64 0.88 -1.3
68,969 + -1.4
69,021 - -1.6
69,046 + -2.7
69,099 + +0.0
69,129 - +0.2
69,165 + +0.5
69,176 - +0.6
69,187 - +0.0
69,207 - -2.5
69,282 + HP15_65 0.14 +0.4
69,282 + HP15_65 0.14 -2.2
69,290 - HP15_65 0.15 +0.0
69,353 - HP15_65 0.19 +0.8
69,401 - HP15_65 0.23 +0.0
69,440 - HP15_65 0.25 -0.4
69,478 + HP15_65 0.28 +0.7
69,541 - HP15_65 0.33 +1.2
69,595 + HP15_65 0.37 -1.9
69,595 - HP15_65 0.37 -1.8
69,613 - HP15_65 0.38 +0.3
69,625 - HP15_65 0.39 -0.2
69,651 - HP15_65 0.41 -2.8
69,652 + HP15_65 0.41 -0.4
69,720 + HP15_65 0.46 +0.4
69,728 - HP15_65 0.46 -0.7
69,775 - HP15_65 0.50 +0.7
69,775 - HP15_65 0.50 +1.0
69,815 - HP15_65 0.52 -0.4
69,842 + HP15_65 0.54 +0.5
69,843 + HP15_65 0.54 -0.8
69,852 - HP15_65 0.55 +0.5
69,913 + HP15_65 0.60 +0.5
69,921 - HP15_65 0.60 +0.1
69,945 + HP15_65 0.62 +0.3
69,945 + HP15_65 0.62 +0.7
69,945 + HP15_65 0.62 +0.4
69,962 + HP15_65 0.63 +0.5
70,044 - HP15_65 0.69 +0.9
70,069 + HP15_65 0.71 +0.0
70,076 - HP15_65 0.71 -0.9
70,133 + HP15_65 0.75 +0.0
70,178 - HP15_65 0.79 -0.2
70,179 + HP15_65 0.79 -1.4
70,179 + HP15_65 0.79 +0.2
70,223 - HP15_65 0.82 +1.1
70,228 - HP15_65 0.82 +1.9
70,266 + HP15_65 0.85 +0.9
70,527 - -0.4
70,527 - -0.1
70,557 - -0.7
70,637 + +0.1
70,645 - -0.4
70,753 - +1.2
70,758 - -3.3
70,765 + -0.6
70,923 - -2.4
71,050 - HP15_66 0.18 -0.7
71,079 - HP15_66 0.20 -0.9
71,121 + HP15_66 0.23 +0.2
71,126 + HP15_66 0.24 +0.0
71,188 - HP15_66 0.28 +1.3
71,222 - HP15_66 0.31 -0.4
71,236 + HP15_66 0.32 +0.3
71,303 + HP15_66 0.36 +1.7
71,328 + HP15_66 0.38 -0.7
71,335 - HP15_66 0.39 -1.8
71,335 - HP15_66 0.39 +1.4
71,352 + HP15_66 0.40 -0.2
71,386 + HP15_66 0.42 -0.0
71,423 + HP15_66 0.45 +0.3
71,446 - HP15_66 0.47 +0.4

Or see this region's nucleotide sequence