Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_410 and HP15_411 overlap by 1 nucleotides HP15_411 and HP15_412 are separated by 1 nucleotides HP15_412 and HP15_413 are separated by 17 nucleotides
HP15_410: HP15_410 - fimbrial assembly family protein, at 406,132 to 406,650
_410
HP15_411: HP15_411 - MshA biogenesis protein, MshJ-like protein, at 406,650 to 407,339
_411
HP15_412: HP15_412 - conserved hypothetical protein, secreted, at 407,341 to 407,691
_412
HP15_413: HP15_413 - pilus (MSHA type) biogenesis protein MshL, at 407,709 to 409,422
_413
Position (kb) 407
408 Strain fitness (log2 ratio) -1
0
1
2 at 406.462 kb on + strand, within HP15_410 at 406.591 kb on + strand, within HP15_410 at 406.677 kb on - strand at 406.693 kb on + strand at 406.693 kb on + strand at 406.693 kb on + strand at 406.747 kb on + strand, within HP15_411 at 406.840 kb on - strand, within HP15_411 at 406.977 kb on + strand, within HP15_411 at 406.978 kb on - strand, within HP15_411 at 407.012 kb on + strand, within HP15_411 at 407.020 kb on - strand, within HP15_411 at 407.126 kb on + strand, within HP15_411 at 407.256 kb on - strand, within HP15_411 at 407.258 kb on - strand, within HP15_411 at 407.413 kb on + strand, within HP15_412 at 407.421 kb on - strand, within HP15_412 at 407.463 kb on + strand, within HP15_412 at 407.551 kb on + strand, within HP15_412 at 407.569 kb on + strand, within HP15_412 at 407.673 kb on + strand at 407.745 kb on + strand at 407.758 kb on - strand at 407.833 kb on + strand at 408.069 kb on - strand, within HP15_413 at 408.265 kb on - strand, within HP15_413 at 408.305 kb on + strand, within HP15_413 at 408.342 kb on - strand, within HP15_413 at 408.522 kb on + strand, within HP15_413
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 406,462 + HP15_410 0.64 -0.1 406,591 + HP15_410 0.88 +0.6 406,677 - +1.3 406,693 + -0.4 406,693 + -1.2 406,693 + +0.0 406,747 + HP15_411 0.14 +0.5 406,840 - HP15_411 0.28 -0.1 406,977 + HP15_411 0.47 +1.1 406,978 - HP15_411 0.48 +1.4 407,012 + HP15_411 0.52 +0.9 407,020 - HP15_411 0.54 +1.4 407,126 + HP15_411 0.69 +0.1 407,256 - HP15_411 0.88 +1.5 407,258 - HP15_411 0.88 +1.5 407,413 + HP15_412 0.21 -0.8 407,421 - HP15_412 0.23 +1.5 407,463 + HP15_412 0.35 +1.7 407,551 + HP15_412 0.60 -0.2 407,569 + HP15_412 0.65 +0.2 407,673 + +0.3 407,745 + +1.7 407,758 - -1.3 407,833 + +1.1 408,069 - HP15_413 0.21 +1.2 408,265 - HP15_413 0.32 +1.2 408,305 + HP15_413 0.35 +1.3 408,342 - HP15_413 0.37 +2.1 408,522 + HP15_413 0.47 +0.6
Or see this region's nucleotide sequence