Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4087 and HP15_4088 are separated by 262 nucleotides HP15_4088 and HP15_4089 overlap by 4 nucleotides
HP15_4087: HP15_4087 - transcriptional regulator, GntR family, at 4,319,591 to 4,320,322
_4087
HP15_4088: HP15_4088 - L-lactate dehydrogenase, LutA subunit <small>(from data)</small>, at 4,320,585 to 4,321,424
_4088
HP15_4089: HP15_4089 - L-lactate dehydrogenase, LutB subunit <small>(from data)</small>, at 4,321,421 to 4,322,872
_4089
Position (kb) 4320
4321
4322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4319.597 kb on - strand at 4319.676 kb on + strand, within HP15_4087 at 4319.718 kb on - strand, within HP15_4087 at 4319.743 kb on + strand, within HP15_4087 at 4319.745 kb on + strand, within HP15_4087 at 4319.753 kb on - strand, within HP15_4087 at 4320.079 kb on - strand, within HP15_4087 at 4320.225 kb on - strand, within HP15_4087 at 4320.314 kb on - strand at 4320.316 kb on + strand at 4320.358 kb on - strand at 4320.436 kb on - strand at 4320.626 kb on + strand at 4320.626 kb on + strand at 4320.658 kb on + strand at 4320.705 kb on + strand, within HP15_4088 at 4320.801 kb on - strand, within HP15_4088 at 4320.833 kb on + strand, within HP15_4088 at 4320.833 kb on + strand, within HP15_4088 at 4320.841 kb on - strand, within HP15_4088 at 4320.929 kb on + strand, within HP15_4088 at 4321.002 kb on + strand, within HP15_4088 at 4321.005 kb on - strand, within HP15_4088 at 4321.131 kb on - strand, within HP15_4088 at 4321.142 kb on + strand, within HP15_4088 at 4321.415 kb on + strand at 4321.452 kb on + strand at 4321.483 kb on - strand at 4321.546 kb on + strand at 4321.575 kb on + strand, within HP15_4089 at 4321.682 kb on - strand, within HP15_4089 at 4321.684 kb on + strand, within HP15_4089 at 4321.780 kb on - strand, within HP15_4089 at 4321.836 kb on + strand, within HP15_4089 at 4321.927 kb on + strand, within HP15_4089 at 4321.971 kb on + strand, within HP15_4089 at 4322.039 kb on - strand, within HP15_4089 at 4322.174 kb on - strand, within HP15_4089 at 4322.246 kb on + strand, within HP15_4089 at 4322.254 kb on - strand, within HP15_4089 at 4322.263 kb on + strand, within HP15_4089 at 4322.286 kb on + strand, within HP15_4089 at 4322.294 kb on + strand, within HP15_4089 at 4322.309 kb on + strand, within HP15_4089 at 4322.405 kb on + strand, within HP15_4089 at 4322.405 kb on + strand, within HP15_4089 at 4322.405 kb on + strand, within HP15_4089 at 4322.413 kb on - strand, within HP15_4089 at 4322.413 kb on - strand, within HP15_4089
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 4,319,597 - +0.9 4,319,676 + HP15_4087 0.12 -0.4 4,319,718 - HP15_4087 0.17 +1.6 4,319,743 + HP15_4087 0.21 +1.9 4,319,745 + HP15_4087 0.21 -1.6 4,319,753 - HP15_4087 0.22 +0.9 4,320,079 - HP15_4087 0.67 +1.5 4,320,225 - HP15_4087 0.87 +0.8 4,320,314 - +1.2 4,320,316 + -2.0 4,320,358 - -0.0 4,320,436 - -1.9 4,320,626 + -2.0 4,320,626 + +0.4 4,320,658 + +0.5 4,320,705 + HP15_4088 0.14 +0.3 4,320,801 - HP15_4088 0.26 +0.3 4,320,833 + HP15_4088 0.30 +0.8 4,320,833 + HP15_4088 0.30 +0.3 4,320,841 - HP15_4088 0.30 -1.0 4,320,929 + HP15_4088 0.41 +0.2 4,321,002 + HP15_4088 0.50 -3.1 4,321,005 - HP15_4088 0.50 +0.2 4,321,131 - HP15_4088 0.65 +0.3 4,321,142 + HP15_4088 0.66 -0.5 4,321,415 + -0.5 4,321,452 + +1.1 4,321,483 - -0.1 4,321,546 + +0.2 4,321,575 + HP15_4089 0.11 -0.1 4,321,682 - HP15_4089 0.18 -0.9 4,321,684 + HP15_4089 0.18 +0.1 4,321,780 - HP15_4089 0.25 -1.6 4,321,836 + HP15_4089 0.29 -2.6 4,321,927 + HP15_4089 0.35 +0.7 4,321,971 + HP15_4089 0.38 -0.2 4,322,039 - HP15_4089 0.43 -0.0 4,322,174 - HP15_4089 0.52 -0.0 4,322,246 + HP15_4089 0.57 -0.1 4,322,254 - HP15_4089 0.57 -0.7 4,322,263 + HP15_4089 0.58 -0.7 4,322,286 + HP15_4089 0.60 +0.0 4,322,294 + HP15_4089 0.60 +0.1 4,322,309 + HP15_4089 0.61 -0.3 4,322,405 + HP15_4089 0.68 +0.6 4,322,405 + HP15_4089 0.68 -0.4 4,322,405 + HP15_4089 0.68 +0.9 4,322,413 - HP15_4089 0.68 -1.4 4,322,413 - HP15_4089 0.68 -0.3
Or see this region's nucleotide sequence